SOAPFuse failing at step s05

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Asmita Gupta

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Jul 23, 2019, 11:33:46 PM7/23/19
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Dear All,

I am usinf SOAPFusev1.27 to identify gene fusions in a set of 57 samples from RNA-Seq data. I got candidate fusion genes initially for 10 samples using the program in the way defined in the sourceforge wiki pages. However, recently while submitting the program on new samples, the program is failing at step 5 with this message - 


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Step s05 starts at Wed Jul 10 06:51:10 IST 2019
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Step s05 didnot finish successfully!


I used these commands for submitting jobs - 

perl /apps/SOAPfuse-v1.27/SOAPfuse-RUN.pl \
        -c /apps/SOAPfuse-v1.27/config/config.txt \
        -fd transcriptome_raw/ \
        -l RI_T40.txt \
        -o soap_tmp/RI_T40


I tried a google search for this problem but unfortunately couldn't find a solution for this

Since I am new to SOAPFuse environment, I am a bit clueless about what's happening wrong here. 

Looking forward to helpful comments

Thanks
Asmita

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