SOAPdenovo-Trans: visualisation of reads on scaffold

[markusth...@googlemail.com]

Hello,

I was wondering how I can visualise the alignmnet of reads which underpin each scaffold (generated by SOAPdenovo Trans), i. e what do I need to do in order to produce a .ace or .bam/bam.bai file or any other file which can be loaded into Tablet, IGV or any other viewer?

Thanks for your help

Markus