Dicom.dcmread

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Sourabh Doherty

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Aug 4, 2024, 6:08:48 PM8/4/24

to bevenanhy

Hiall

In my project I am trying to register two sets of images.

When I read my moving image which is a T1 MR Quantitative Map , using DICOM reader [pydicom.dcmread] , the image is loaded correctly as below:

[note that dtype=int16]

However, when I read the same series of DICOM images using itk library doing

is there anything i can do about it ?

also this needs to be considered that in itk documentation is mentioned for doing elastix registration (which is what I want to do) reading with itk.F is needed

P.S. BTW, another (unrelated) issue is that all images share the same Series UID, but have different Study UIDs and Frame of Reference UIDs. It is wrong.

Here is fixed version: T1monochrome-2.zip (1.4 MB)

I have tried to look at the palette, but I have to give up. Every image has different palette data and settings, I looked at binary data of the palette of image0001.dcm and image0015.dcm, all three (red, green, blue) seem to contain only 0x00 or 0xFF. No DICOM viewer I have tried could open palette better. I hope monochrome version from the above post is OK.