merge two bed files?

[zl]

Hi,

does anyone know to merge two bed files with "mergeBed"?

Thanks,

Zhaoyu

[Can Alkan]

cat file1 file2 | mergeBed -i stdin

?

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[Aaron Quinlan]

Hi Zhaoyu,

Can described the preferred method.

Or, to save the intermediate step:

$ cat file1 file2 ... fileN > file1-N.nonunique.bed

$ mergeBed -i file1-N.nonunique.bed > file1-N.merged.bed

Aaron

[zl]

Can & Aaron,

Thanks a lot!

Zhaoyu

On Apr 8, 5:08 pm, Aaron Quinlan <aaronquin...@gmail.com> wrote:
> Hi Zhaoyu,
>
> Can described the preferred method.
>
> Or, to save the intermediate step:
> $ cat file1 file2 ... fileN > file1-N.nonunique.bed
> $ mergeBed -i file1-N.nonunique.bed > file1-N.merged.bed
>
> Aaron
>
> On Apr 8, 2010, at 4:40 PM, Can Alkan wrote:
>
> > cat file1 file2 | mergeBed -i stdin
>
> > ?
>