- bedtools intersect bug - 1 Update
Jb DIDI <jun...@gmail.com>: Nov 11 02:51PM -0800
There is a bug in bedtools 2.30
if there is a very long line in both input files, then bedtools inersect
-wa -wb will not export the full line but only partial . However, there is
not such maximum line length in each row when using bedtools 2.27 intersect
,
Hope this bug will be fixed soon!
junbai
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Aaron Quinlan <aaronq...@gmail.com>: Nov 27 03:27AM -0700
Hi Ramky,
You can use the “window” tool to look for overlaps within a specified number of basepairs from the main interval. Also, the “closest” tool will report both overlapping intervals, and when there are none, the closest interval or the closest k intervals.
Aaron