i tried to installed betools in my mac but i do not know what is going wrong
i looked in Google and i found that i have to download Xcode. i already downloaded it .
curl
http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz > BEDTools.tar.gz
tar -zxvf BEDTools.tar.gz
cd /Users/joojoo210/Desktop/bedtools-2.17.0
make
the error is :
make: command not found
Also i read one articale which suggest to try Homebrew, which still includes the installation
of Xcode, installing BEDTools would be as easy as:
$ brew install bedtools
but there was an error saying :
Error: No available formula for bedtools
now i have spent 3 days just looking to install bedtools to Convert the (filtered) bam files to bed files, using bedtools :
setup bedtools
bamToBed -i LS.bam > LS.bed.
any help will be appreciated