EOF marker is absent

[raghav]

hello Sir,

 when I am running bam2 bed program 

[cdac@nbri bin]$ bam2bed /storage/home/cdac/raghav/bowtie2-2.1.0/uniquely_SRR681003_1.bam >uniquely_SRR681003_1.bed

[bam_header_read] EOF marker is absent. The input is probably truncated.

I have got this msg on console 

[bam_header_read] EOF marker is absent. The input is probably truncated.

I am worried why this is printing on my screen while running program ??

Is it influence my downstream analysis????

thank you Sir 

[Alex Reynolds]

Try:

$ bam2bed < /storage/home/cdac/raghav/bowtie2-2.1.0/uniquely_SRR681003_1.bam > uniquely_SRR681003_1.bed

-Alex