An error of Markov Jump model

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yuhan

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May 24, 2016, 10:35:10 AM5/24/16
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Hi,all

I  have a problem when I'm attempt to run Markov Jumps,The xml file was generated with Beauti v1.8.3,but it always appear an error. I did not find the solution for that, Here is an error:

dr.xml.XMLParseException: Error parsing '<logTree>' element with id, 'treeFileLog':
Trait named, 1.count, not found for MarkovJumpsBeagleTreeLikelihood(treeLikelihood[1.treeLikelihood])
at dr.xml.AbstractXMLObjectParser.parseXMLObject(Unknown Source)
at dr.xml.XMLParser.convert(Unknown Source)
at dr.xml.XMLParser.convert(Unknown Source)
at dr.xml.XMLParser.convert(Unknown Source)
at dr.xml.XMLParser.parse(Unknown Source)
at dr.app.beast.BeastMain.<init>(Unknown Source)
at dr.app.beast.BeastMain.main(Unknown Source)
May 24, 2016 10:28:14 PM dr.app.beast.BeastMain <init>
SEVERE: Parsing error - poorly formed BEAST file, E.xml:
Error parsing '<logTree>' element with id, 'treeFileLog':
Trait named, 1.count, not found for MarkovJumpsBeagleTreeLikelihood(treeLikelihood[1.treeLikelihood])
java.lang.RuntimeException: Terminate
at dr.app.beast.BeastMain.<init>(Unknown Source)
at dr.app.beast.BeastMain.main(Unknown Source)
  Using rescaling scheme : delayed
Parameter weights for delta exchange are: 990 495
Creating swap operator for parameter E.branchRates.categories (weight=10.0)
Optimization Schedule: log

Is it parameters problem?anyone can help me?

Thanks,

Yuhan

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