BEAST: Failed to load parser

[Michael]

Dear all,

I am new to BEAST. I am running BEAST v1.10.0 with BEAGLE library v3.0.2 on Ubuntu 16.04.

I saw "Failed to load parser" messages when I tried to run some tests. However, it seemed able to finish the analysis and I can get the result.

The messages I got were as follows:

Random number seed: 1533126011309

Failed to load parser: dr.inferencexml.model.FastBUTMPParser

line = dr.inferencexml.model.FastBUTMPParser

Failed to load parser: dr.evomodelxml.branchratemodel.RandomDiscretizedBranchRatesParser

line = dr.evomodelxml.branchratemodel.RandomDiscretizedBranchRatesParser

Failed to load parser: dr.evomodel.trace.DnDsPerSiteAnalysis

line = dr.evomodel.trace.DnDsPerSiteAnalysis

Failed to load parser: dr.evomodel.trace.CnCsPerSiteAnalysis

line = dr.evomodel.trace.CnCsPerSiteAnalysis

Failed to load parser: dr.evomodel.trace.CnCsToDnDsPerSiteAnalysis

line = dr.evomodel.trace.CnCsToDnDsPerSiteAnalysis

Failed to load parser: dr.evomodelxml.continuous.hmc.BranchRateGradientParser

line = dr.evomodelxml.continuous.hmc.BranchRateGradientParser

Loading additional development parsers from development_parsers.properties, which is additional set of parsers only available for development version ...

Failed to load parser: dr.evomodel.branchratemodel.TimeDependentBranchRates

line = dr.evomodel.branchratemodel.TimeDependentBranchRates

Failed to load parser: dr.evomodel.continuous.MissingInjection

line = dr.evomodel.continuous.MissingInjection

Failed to load parser: dr.evomodel.continuous.MissingInjectionLogger

line = dr.evomodel.continuous.MissingInjectionLogger

Dose anyone have any idea what causes these messages? Many thanks.

Best wishes,

Michael

[Guy Baele]

Hi Michael,

Yes, we are aware that these parser messages can be confusing, but they indeed shouldn't interfere with your analyses.

Best regards,
Guy

Op woensdag 1 augustus 2018 11:05:32 UTC-7 schreef Michael:

[Michael]

Hi Guy,

Thanks for your reply. I can now go ahead and analyse other sequence data!

Best wishes,

Michael