beagle couldn't work, any help appreciated
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jp...@nwipb.ac.cn
Feb 5, 2010, 6:59:56 AM2/5/10
to beast...@googlegroups.com
Hi, beast users
I have tried to run beast with beagle, but failed. when I tested the beagle installation, I got the message like this
BEAGLE resources available:
0 : CPU
Flags: DOUBLE SINGLE ASYNCH COMPLEX LSCALE
1 : GeForce GTX 295
Global memory (MB): 896
Clock speed (Ghz): 1.24
Number of cores: 240
Flags: DOUBLE ASYNCH COMPLEX LSCALE CPU
2 : GeForce GTX 295
Global memory (MB): 896
Clock speed (Ghz): 1.24
Number of cores: 240
Flags: DOUBLE ASYNCH COMPLEX LSCALE CPU
when i rerun beast with beage and any xml file, beast (ver.1.5.3) crashed with the following infomation
Process: JavaApplicationStub [258]
Path: /Users/sujp/Desktop/beast/BEAST v1.5.3.app/Contents/MacOS/JavaApplicationStub
Identifier: dr.app.beast
Version: 1.5.3 (???)
Code Type: X86 (Native)
Parent Process: launchd [100]
Date/Time: 2010-02-05 11:36:39.389 +0000
OS Version: Mac OS X 10.6.2 (10C540)
Report Version: 6
Interval Since Last Report: 1385456 sec
Crashes Since Last Report: 26
Per-App Interval Since Last Report: 351257 sec
Per-App Crashes Since Last Report: 11
Anonymous UUID: F3E6274F-8F48-41E3-8175-512CD2D18982
Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000005
Crashed Thread: 2
Application Specific Information:
Java information:
Exception type: Bus Error (0xa) at pc=0x028baf97
Java VM: Java HotSpot(TM) Client VM (14.3-b01-101 mixed mode macosx-x86)
Current thread (0x03000c00): JavaThread "main" [_thread_in_vm, id=-1332719616, stack(0xb0105000,0xb0905000)]
Stack: [0xb0105000,0xb0905000]
Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
j beagle.BeagleJNIWrapper.createInstance(IIIIIIIII[IIJJ)I+0
j beagle.BeagleJNIImpl.<init>(IIIIIIIII[IJJ)V+56
j beagle.BeagleFactory.loadBeagleInstance(IIIIIIIII[IJJ)Lbeagle/Beagle;+65
j dr.app.beagle.evomodel.treelikelihood.BeagleTreeLikelihood.<init>(Ldr/evolution/alignment/PatternList;Ldr/evomodel/tree/TreeModel;Ldr/app/beagle/evomodel/sitemodel/BranchSiteModel;Ldr/app/beagle/evomodel/sitemodel/SiteRateModel;Ldr/evomodel/branchratemodel/BranchRateModel;ZLdr/app/beagle/evomodel/treelikelihood/PartialsRescalingScheme;)V+613
j dr.app.beagle.evomodel.parsers.TreeLikelihoodParser.parseXMLObject(Ldr/xml/XMLObject;)Ljava/lang/Object;+240
j dr.xml.AbstractXMLObjectParser.parseXMLObject(Ldr/xml/XMLObject;Ljava/lang/String;Ldr/xml/ObjectStore;Z)Ljava/lang/Object;+616
j dr.xml.XMLParser.convert(Lorg/w3c/dom/Element;Ljava/lang/Class;ZZ)Ljava/lang/Object;+859
j dr.xml.XMLParser.convert(Lorg/w3c/dom/Element;Ljava/lang/Class;ZZ)Ljava/lang/Object;+662
j dr.xml.XMLParser.parse(Ljava/io/Reader;Z)Ldr/xml/ObjectStore;+65
j dr.app.beast.BeastMain.<init>(Ljava/io/File;Ldr/app/beast/BeastMain$BeastConsoleApp;IZZZLjava/util/List;)V+304
j dr.app.beast.BeastMain.main([Ljava/lang/String;)V+1411
v ~StubRoutines::call_stub
j sun.reflect.NativeMethodAccessorImpl.invoke0(Ljava/lang/reflect/Method;Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+0
j sun.reflect.NativeMethodAccessorImpl.invoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+87
j sun.reflect.DelegatingMethodAccessorImpl.invoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+6
j java.lang.reflect.Method.invoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+161
j apple.launcher.LaunchRunner.run()V+76
j apple.launcher.LaunchRunner.callMain()V+1
j apple.launcher.JavaApplicationLauncher.launch(JJZ)V+11
v ~StubRoutines::call_stub
Java Threads: ( => current thread )
0x0324ec00 JavaThread "TimerQueue" daemon [_thread_blocked, id=-1304150016, stack(0xb2344000,0xb2444000)]
0x0324d800 JavaThread "Thread-3" [_thread_blocked, id=-1305206784, stack(0xb2242000,0xb2342000)]
0x0321e800 JavaThread "Thread-2" [_thread_blocked, id=-1306263552, stack(0xb2140000,0xb2240000)]
0x03236000 JavaThread "AWT-EventQueue-0" [_thread_blocked, id=-1307320320, stack(0xb203e000,0xb213e000)]
0x4d8a4c00 JavaThread "Java2D Disposer" daemon [_thread_blocked, id=-1308377088, stack(0xb1f3c000,0xb203c000)]
0x4d85dc00 JavaThread "AWT-Shutdown" [_thread_blocked, id=-1310527488, stack(0xb1d2f000,0xb1e2f000)]
0x4d85d400 JavaThread "AWT-AppKit" daemon [_thread_in_native, id=-1600101120, stack(0xbf800000,0xc0000000)]
0x4d029400 JavaThread "Low Memory Detector" daemon [_thread_blocked, id=-1312641024, stack(0xb1b2b000,0xb1c2b000)]
0x4d028800 JavaThread "CompilerThread0" daemon [_thread_blocked, id=-1313697792, stack(0xb1a29000,0xb1b29000)]
0x4d027800 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=-1314754560, stack(0xb1927000,0xb1a27000)]
0x4d026800 JavaThread "Surrogate Locker Thread (CMS)" daemon [_thread_blocked, id=-1315811328, stack(0xb1825000,0xb1925000)]
0x03205400 JavaThread "Finalizer" daemon [_thread_blocked, id=-1316868096, stack(0xb1723000,0xb1823000)]
0x03204400 JavaThread "Reference Handler" daemon [_thread_blocked, id=-1317924864, stack(0xb1621000,0xb1721000)]
=>0x03000c00 JavaThread "main" [_thread_in_vm, id=-1332719616, stack(0xb0105000,0xb0905000)]
Other Threads:
0x03200800 VMThread [stack: 0xb151f000,0xb161f000] [id=-1318981632]
0x4d02a400 WatcherThread [stack: 0xb1c2d000,0xb1d2d000] [id=-1311584256]
VM state:not at safepoint (normal execution)
VM Mutex/Monitor currently owned by a thread: None
Heap
par new generation total 14336K, used 5483K [0x06810000, 0x07810000, 0x0b6d0000)
eden space 12288K, 32% used [0x06810000, 0x06be71b8, 0x07410000)
from space 2048K, 75% used [0x07410000, 0x07593df8, 0x07610000)
to space 2048K, 0% used [0x07610000, 0x07610000, 0x07810000)
concurrent mark-sweep generation total 49152K, used 2048K [0x0b6d0000, 0x0e6d0000, 0x46810000)
concurrent-mark-sweep perm gen total 20468K, used 15941K [0x46810000, 0x47c0d000, 0x4a810000)
Virtual Machine Arguments:
JVM Args: -Xbootclasspath/a:/System/Library/PrivateFrameworks/JavaApplicationLauncher.framework/Resources/LauncherSupport.jar -Xmx1024M -Dapple.laf.useScreenMenuBar=true -Djava.library.path=/Users/sujp/Desktop/beast/BEAST v1.5.3.app/Contents/Resources/Java:/usr/local/lib:/System/Library/PrivateFrameworks/JavaApplicationLauncher.framework/Resources
Java Command: <unknown>
Launcher Type: generic
Physical Memory: Page Size = 4k, Total = 6144M, Free = 544M
Thread 0: Dispatch queue: com.apple.main-thread
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 com.apple.CoreFoundation 0x9305977f __CFRunLoopRun + 2079
3 com.apple.CoreFoundation 0x93058864 CFRunLoopRunSpecific + 452
4 com.apple.CoreFoundation 0x93058691 CFRunLoopRunInMode + 97
5 com.apple.HIToolbox 0x91ad2f0c RunCurrentEventLoopInMode + 392
6 com.apple.HIToolbox 0x91ad2cc3 ReceiveNextEventCommon + 354
7 com.apple.HIToolbox 0x91ad2b48 BlockUntilNextEventMatchingListInMode + 81
8 com.apple.AppKit 0x96015ac5 _DPSNextEvent + 847
9 com.apple.AppKit 0x96015306 -[NSApplication nextEventMatchingMask:untilDate:inMode:dequeue:] + 156
10 com.apple.AppKit 0x95fd749f -[NSApplication run] + 821
11 libawt.jnilib 0x4cd48dfa +[AWTStarter startAWT:] + 1706
12 libawt.jnilib 0x4cd06727 -[CPerformer perform] + 243
13 com.apple.Foundation 0x9065dde1 __NSThreadPerformPerform + 506
14 com.apple.CoreFoundation 0x9305b8cb __CFRunLoopDoSources0 + 1563
15 com.apple.CoreFoundation 0x9305938f __CFRunLoopRun + 1071
16 com.apple.CoreFoundation 0x93058864 CFRunLoopRunSpecific + 452
17 com.apple.CoreFoundation 0x93058691 CFRunLoopRunInMode + 97
18 ...ple.JavaApplicationLauncher 0x0000858e startupJava(LauncherArgsStruct*) + 342
19 ...ple.JavaApplicationLauncher 0x000078cf launchJavaApplication + 1355
20 dr.app.beast 0x00001e3a 0x1000 + 3642
21 dr.app.beast 0x00001c99 0x1000 + 3225
22 dr.app.beast 0x00001bc8 0x1000 + 3016
Thread 1: Dispatch queue: com.apple.libdispatch-manager
0 libSystem.B.dylib 0x982680ea kevent + 10
1 libSystem.B.dylib 0x98268804 _dispatch_mgr_invoke + 215
2 libSystem.B.dylib 0x98267cc3 _dispatch_queue_invoke + 163
3 libSystem.B.dylib 0x98267a68 _dispatch_worker_thread2 + 234
4 libSystem.B.dylib 0x982674f1 _pthread_wqthread + 390
5 libSystem.B.dylib 0x98267336 start_wqthread + 30
Thread 2 Crashed:
0 libclient.dylib 0x028baf97 JVM_MonitorWait + 14423
1 libclient.dylib 0x0290e1dd JVM_Socket + 2573
2 libhmsbeagle-jni.jnilib 0x6d112a1c JNIEnv_::CallVoidMethod(_jobject*, _jmethodID*, ...) + 44
3 libhmsbeagle-jni.jnilib 0x6d112907 Java_beagle_BeagleJNIWrapper_createInstance + 375
4 ??? 0x0480b839 0 + 75544633
5 ??? 0x04803ed5 0 + 75513557
6 ??? 0x04803db1 0 + 75513265
7 ??? 0x04803f17 0 + 75513623
8 ??? 0x04803db1 0 + 75513265
9 ??? 0x04803f17 0 + 75513623
10 ??? 0x048043f3 0 + 75514867
11 ??? 0x04803f17 0 + 75513623
12 ??? 0x04803f17 0 + 75513623
13 ??? 0x04803f17 0 + 75513623
14 ??? 0x04803db1 0 + 75513265
15 ??? 0x048012d3 0 + 75502291
16 libclient.dylib 0x028a57d0 JVM_Lseek + 149024
17 libclient.dylib 0x028a5576 JVM_Lseek + 148422
18 libclient.dylib 0x028a5546 JVM_Lseek + 148374
19 libclient.dylib 0x028c7fe8 JVM_NewInstanceFromConstructor + 3896
20 libclient.dylib 0x028c9bde JVM_InvokeMethod + 1342
21 libclient.dylib 0x028c9892 JVM_InvokeMethod + 498
22 libjava.jnilib 0x000ab16a Java_sun_reflect_NativeMethodAccessorImpl_invoke0 + 38
23 ??? 0x0480b839 0 + 75544633
24 ??? 0x04803f17 0 + 75513623
25 ??? 0x04803f17 0 + 75513623
26 ??? 0x048043f3 0 + 75514867
27 ??? 0x04803f17 0 + 75513623
28 ??? 0x04803db1 0 + 75513265
29 ??? 0x04803db1 0 + 75513265
30 ??? 0x048012d3 0 + 75502291
31 libclient.dylib 0x028a57d0 JVM_Lseek + 149024
32 libclient.dylib 0x028a5576 JVM_Lseek + 148422
33 libclient.dylib 0x028a5546 JVM_Lseek + 148374
34 libclient.dylib 0x028d6051 JVM_FindLoadedClass + 3441
35 libclient.dylib 0x0290ec02 JVM_Socket + 5170
36 ...ple.JavaApplicationLauncher 0x00009c12 JNIEnv_::CallStaticVoidMethod(_jclass*, _jmethodID*, ...) + 44
37 ...ple.JavaApplicationLauncher 0x0000947b startJavaApplication + 3627
38 ...ple.JavaApplicationLauncher 0x0000864e runJava(LauncherArgsStruct*) + 78
39 ...ple.JavaApplicationLauncher 0x000085f8 java_main_stub(void*) + 22
40 libSystem.B.dylib 0x9826efbd _pthread_start + 345
41 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 3: Java: Exception Handler Thread
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libSystem.B.dylib 0x982ad5d8 mach_msg_server + 520
3 libclient.dylib 0x0280fe25 JNI_CreateJavaVM_Impl + 61045
4 libclient.dylib 0x0280fdca JNI_CreateJavaVM_Impl + 60954
5 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
6 libSystem.B.dylib 0x9826efbd _pthread_start + 345
7 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 4: Java: Gang worker#0 (Parallel GC Threads)
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x0280e928 JNI_CreateJavaVM_Impl + 55672
5 libclient.dylib 0x0280e588 JNI_CreateJavaVM_Impl + 54744
6 libclient.dylib 0x02824931 jio_vsnprintf + 321
7 libclient.dylib 0x0282486a jio_vsnprintf + 122
8 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
9 libSystem.B.dylib 0x9826efbd _pthread_start + 345
10 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 5: Java: Gang worker#1 (Parallel GC Threads)
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x0280e928 JNI_CreateJavaVM_Impl + 55672
5 libclient.dylib 0x0280e588 JNI_CreateJavaVM_Impl + 54744
6 libclient.dylib 0x02824931 jio_vsnprintf + 321
7 libclient.dylib 0x0282486a jio_vsnprintf + 122
8 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
9 libSystem.B.dylib 0x9826efbd _pthread_start + 345
10 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 6: Java: Gang worker#2 (Parallel GC Threads)
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x0280e928 JNI_CreateJavaVM_Impl + 55672
5 libclient.dylib 0x0280e588 JNI_CreateJavaVM_Impl + 54744
6 libclient.dylib 0x02824931 jio_vsnprintf + 321
7 libclient.dylib 0x0282486a jio_vsnprintf + 122
8 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
9 libSystem.B.dylib 0x9826efbd _pthread_start + 345
10 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 7: Java: Gang worker#3 (Parallel GC Threads)
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x0280e928 JNI_CreateJavaVM_Impl + 55672
5 libclient.dylib 0x0280e588 JNI_CreateJavaVM_Impl + 54744
6 libclient.dylib 0x02824931 jio_vsnprintf + 321
7 libclient.dylib 0x0282486a jio_vsnprintf + 122
8 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
9 libSystem.B.dylib 0x9826efbd _pthread_start + 345
10 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 8: Java: Gang worker#4 (Parallel GC Threads)
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x0280e928 JNI_CreateJavaVM_Impl + 55672
5 libclient.dylib 0x0280e588 JNI_CreateJavaVM_Impl + 54744
6 libclient.dylib 0x02824931 jio_vsnprintf + 321
7 libclient.dylib 0x0282486a jio_vsnprintf + 122
8 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
9 libSystem.B.dylib 0x9826efbd _pthread_start + 345
10 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 9: Java: Gang worker#5 (Parallel GC Threads)
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x0280e928 JNI_CreateJavaVM_Impl + 55672
5 libclient.dylib 0x0280e588 JNI_CreateJavaVM_Impl + 54744
6 libclient.dylib 0x02824931 jio_vsnprintf + 321
7 libclient.dylib 0x0282486a jio_vsnprintf + 122
8 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
9 libSystem.B.dylib 0x9826efbd _pthread_start + 345
10 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 10: Java: Gang worker#6 (Parallel GC Threads)
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x0280e928 JNI_CreateJavaVM_Impl + 55672
5 libclient.dylib 0x0280e588 JNI_CreateJavaVM_Impl + 54744
6 libclient.dylib 0x02824931 jio_vsnprintf + 321
7 libclient.dylib 0x0282486a jio_vsnprintf + 122
8 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
9 libSystem.B.dylib 0x9826efbd _pthread_start + 345
10 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 11: Java: Gang worker#7 (Parallel GC Threads)
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x0280e928 JNI_CreateJavaVM_Impl + 55672
5 libclient.dylib 0x0280e588 JNI_CreateJavaVM_Impl + 54744
6 libclient.dylib 0x02824931 jio_vsnprintf + 321
7 libclient.dylib 0x0282486a jio_vsnprintf + 122
8 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
9 libSystem.B.dylib 0x9826efbd _pthread_start + 345
10 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 12: Java: Gang worker#0 (Parallel CMS Threads)
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x0280e928 JNI_CreateJavaVM_Impl + 55672
5 libclient.dylib 0x0280e588 JNI_CreateJavaVM_Impl + 54744
6 libclient.dylib 0x02b99eb7 JVM_RaiseSignal + 800087
7 libclient.dylib 0x0282486a jio_vsnprintf + 122
8 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
9 libSystem.B.dylib 0x9826efbd _pthread_start + 345
10 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 13: Java: Gang worker#1 (Parallel CMS Threads)
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x0280e928 JNI_CreateJavaVM_Impl + 55672
5 libclient.dylib 0x0280e588 JNI_CreateJavaVM_Impl + 54744
6 libclient.dylib 0x02b99eb7 JVM_RaiseSignal + 800087
7 libclient.dylib 0x0282486a jio_vsnprintf + 122
8 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
9 libSystem.B.dylib 0x9826efbd _pthread_start + 345
10 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 14: Java: Concurrent Mark-Sweep GC Thread
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280f037 JNI_CreateJavaVM_Impl + 57479
3 libclient.dylib 0x0282bbb0 jio_vsnprintf + 29632
4 libclient.dylib 0x0280e9b7 JNI_CreateJavaVM_Impl + 55815
5 libclient.dylib 0x0280e588 JNI_CreateJavaVM_Impl + 54744
6 libclient.dylib 0x028e8b8c JVM_Available + 29852
7 libclient.dylib 0x0282b992 jio_vsnprintf + 29090
8 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
9 libSystem.B.dylib 0x9826efbd _pthread_start + 345
10 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 15: Java: VM Thread
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280f037 JNI_CreateJavaVM_Impl + 57479
3 libclient.dylib 0x0282bbb0 jio_vsnprintf + 29632
4 libclient.dylib 0x0280e9b7 JNI_CreateJavaVM_Impl + 55815
5 libclient.dylib 0x0280e588 JNI_CreateJavaVM_Impl + 54744
6 libclient.dylib 0x028a3f5b JVM_Lseek + 142763
7 libclient.dylib 0x028a3c8a JVM_Lseek + 142042
8 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
9 libSystem.B.dylib 0x9826efbd _pthread_start + 345
10 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 16: Java: Reference Handler
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x028b8c95 JVM_MonitorWait + 5461
5 libclient.dylib 0x028b7bfe JVM_MonitorWait + 1214
6 libclient.dylib 0x028b787a JVM_MonitorWait + 314
7 ??? 0x0480b839 0 + 75544633
8 ??? 0x04803db1 0 + 75513265
9 ??? 0x04803db1 0 + 75513265
10 ??? 0x048012d3 0 + 75502291
11 libclient.dylib 0x028a57d0 JVM_Lseek + 149024
12 libclient.dylib 0x028a5576 JVM_Lseek + 148422
13 libclient.dylib 0x028b711b JVM_InternString + 2123
14 libclient.dylib 0x028b6f8a JVM_InternString + 1722
15 libclient.dylib 0x028b6d74 JVM_InternString + 1188
16 libclient.dylib 0x028b680f JVM_StartThread + 2175
17 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
18 libSystem.B.dylib 0x9826efbd _pthread_start + 345
19 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 17: Java: Finalizer
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x028b8c95 JVM_MonitorWait + 5461
5 libclient.dylib 0x028b7bfe JVM_MonitorWait + 1214
6 libclient.dylib 0x028b787a JVM_MonitorWait + 314
7 ??? 0x0480b839 0 + 75544633
8 ??? 0x04803db1 0 + 75513265
9 ??? 0x04988954 0 + 77105492
10 ??? 0x04803f17 0 + 75513623
11 ??? 0x048012d3 0 + 75502291
12 libclient.dylib 0x028a57d0 JVM_Lseek + 149024
13 libclient.dylib 0x028a5576 JVM_Lseek + 148422
14 libclient.dylib 0x028b711b JVM_InternString + 2123
15 libclient.dylib 0x028b6f8a JVM_InternString + 1722
16 libclient.dylib 0x028b6d74 JVM_InternString + 1188
17 libclient.dylib 0x028b680f JVM_StartThread + 2175
18 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
19 libSystem.B.dylib 0x9826efbd _pthread_start + 345
20 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 18: Java: Surrogate Locker Thread (CMS)
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x0280e928 JNI_CreateJavaVM_Impl + 55672
5 libclient.dylib 0x0280e4a9 JNI_CreateJavaVM_Impl + 54521
6 libclient.dylib 0x028ce097 JVM_IsPrimitiveClass + 7639
7 libclient.dylib 0x028cdc11 JVM_IsPrimitiveClass + 6481
8 libclient.dylib 0x028b6d74 JVM_InternString + 1188
9 libclient.dylib 0x028b680f JVM_StartThread + 2175
10 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
11 libSystem.B.dylib 0x9826efbd _pthread_start + 345
12 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 19: Java: Signal Dispatcher
0 libSystem.B.dylib 0x98241916 semaphore_wait_trap + 10
1 libclient.dylib 0x028ceb5e JVM_IsPrimitiveClass + 10398
2 libclient.dylib 0x028ce92e JVM_IsPrimitiveClass + 9838
3 libclient.dylib 0x028b6d74 JVM_InternString + 1188
4 libclient.dylib 0x028b680f JVM_StartThread + 2175
5 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
6 libSystem.B.dylib 0x9826efbd _pthread_start + 345
7 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 20: Java: CompilerThread0
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x0280e928 JNI_CreateJavaVM_Impl + 55672
5 libclient.dylib 0x0280e4a9 JNI_CreateJavaVM_Impl + 54521
6 libclient.dylib 0x028cfec2 JVM_IsPrimitiveClass + 15362
7 libclient.dylib 0x028cfc9b JVM_IsPrimitiveClass + 14811
8 libclient.dylib 0x028b6d74 JVM_InternString + 1188
9 libclient.dylib 0x028b680f JVM_StartThread + 2175
10 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
11 libSystem.B.dylib 0x9826efbd _pthread_start + 345
12 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 21: Java: Low Memory Detector
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x0280e928 JNI_CreateJavaVM_Impl + 55672
5 libclient.dylib 0x0280e588 JNI_CreateJavaVM_Impl + 54744
6 libclient.dylib 0x028d3e32 JVM_IsPrimitiveClass + 31602
7 libclient.dylib 0x028b6d74 JVM_InternString + 1188
8 libclient.dylib 0x028b680f JVM_StartThread + 2175
9 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
10 libSystem.B.dylib 0x9826efbd _pthread_start + 345
11 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 22: Java: VM Periodic Task Thread
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280f037 JNI_CreateJavaVM_Impl + 57479
3 libclient.dylib 0x028d510d JVM_IsPrimitiveClass + 36429
4 libclient.dylib 0x028d4cb3 JVM_IsPrimitiveClass + 35315
5 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
6 libSystem.B.dylib 0x9826efbd _pthread_start + 345
7 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 23: Java: AWT-Shutdown
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x028b8c95 JVM_MonitorWait + 5461
5 libclient.dylib 0x028b7bfe JVM_MonitorWait + 1214
6 libclient.dylib 0x028b787a JVM_MonitorWait + 314
7 ??? 0x0480b839 0 + 75544633
8 ??? 0x04803db1 0 + 75513265
9 ??? 0x04803db1 0 + 75513265
10 ??? 0x0480428d 0 + 75514509
11 ??? 0x048012d3 0 + 75502291
12 libclient.dylib 0x028a57d0 JVM_Lseek + 149024
13 libclient.dylib 0x028a5576 JVM_Lseek + 148422
14 libclient.dylib 0x028b711b JVM_InternString + 2123
15 libclient.dylib 0x028b6f8a JVM_InternString + 1722
16 libclient.dylib 0x028b6d74 JVM_InternString + 1188
17 libclient.dylib 0x028b680f JVM_StartThread + 2175
18 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
19 libSystem.B.dylib 0x9826efbd _pthread_start + 345
20 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 24: Java: Java2D Disposer
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x028b8c95 JVM_MonitorWait + 5461
5 libclient.dylib 0x028b7bfe JVM_MonitorWait + 1214
6 libclient.dylib 0x028b787a JVM_MonitorWait + 314
7 ??? 0x0480b839 0 + 75544633
8 ??? 0x04803db1 0 + 75513265
9 ??? 0x04803f17 0 + 75513623
10 ??? 0x04803f17 0 + 75513623
11 ??? 0x0480428d 0 + 75514509
12 ??? 0x048012d3 0 + 75502291
13 libclient.dylib 0x028a57d0 JVM_Lseek + 149024
14 libclient.dylib 0x028a5576 JVM_Lseek + 148422
15 libclient.dylib 0x028b711b JVM_InternString + 2123
16 libclient.dylib 0x028b6f8a JVM_InternString + 1722
17 libclient.dylib 0x028b6d74 JVM_InternString + 1188
18 libclient.dylib 0x028b680f JVM_StartThread + 2175
19 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
20 libSystem.B.dylib 0x9826efbd _pthread_start + 345
21 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 25: Java: AWT-EventQueue-0
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x028b8c95 JVM_MonitorWait + 5461
5 libclient.dylib 0x028b7bfe JVM_MonitorWait + 1214
6 libclient.dylib 0x028b787a JVM_MonitorWait + 314
7 ??? 0x0480b839 0 + 75544633
8 ??? 0x04917ec8 0 + 76644040
9 ??? 0x04920968 0 + 76679528
10 ??? 0x04803fdd 0 + 75513821
11 ??? 0x04803db1 0 + 75513265
12 ??? 0x04803db1 0 + 75513265
13 ??? 0x04803db1 0 + 75513265
14 ??? 0x04803db1 0 + 75513265
15 ??? 0x048012d3 0 + 75502291
16 libclient.dylib 0x028a57d0 JVM_Lseek + 149024
17 libclient.dylib 0x028a5576 JVM_Lseek + 148422
18 libclient.dylib 0x028b711b JVM_InternString + 2123
19 libclient.dylib 0x028b6f8a JVM_InternString + 1722
20 libclient.dylib 0x028b6d74 JVM_InternString + 1188
21 libclient.dylib 0x028b680f JVM_StartThread + 2175
22 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
23 libSystem.B.dylib 0x9826efbd _pthread_start + 345
24 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 26: Java: Thread-2
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280f037 JNI_CreateJavaVM_Impl + 57479
3 libclient.dylib 0x028d4fce JVM_IsPrimitiveClass + 36110
4 libclient.dylib 0x0291a223 JVM_Sleep + 403
5 ??? 0x0480b839 0 + 75544633
6 ??? 0x04803db1 0 + 75513265
7 ??? 0x048012d3 0 + 75502291
8 libclient.dylib 0x028a57d0 JVM_Lseek + 149024
9 libclient.dylib 0x028a5576 JVM_Lseek + 148422
10 libclient.dylib 0x028b711b JVM_InternString + 2123
11 libclient.dylib 0x028b6f8a JVM_InternString + 1722
12 libclient.dylib 0x028b6d74 JVM_InternString + 1188
13 libclient.dylib 0x028b680f JVM_StartThread + 2175
14 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
15 libSystem.B.dylib 0x9826efbd _pthread_start + 345
16 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 27: Java: Thread-3
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280f037 JNI_CreateJavaVM_Impl + 57479
3 libclient.dylib 0x028d4fce JVM_IsPrimitiveClass + 36110
4 libclient.dylib 0x0291a223 JVM_Sleep + 403
5 ??? 0x0480b839 0 + 75544633
6 ??? 0x04803db1 0 + 75513265
7 ??? 0x048012d3 0 + 75502291
8 libclient.dylib 0x028a57d0 JVM_Lseek + 149024
9 libclient.dylib 0x028a5576 JVM_Lseek + 148422
10 libclient.dylib 0x028b711b JVM_InternString + 2123
11 libclient.dylib 0x028b6f8a JVM_InternString + 1722
12 libclient.dylib 0x028b6d74 JVM_InternString + 1188
13 libclient.dylib 0x028b680f JVM_StartThread + 2175
14 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
15 libSystem.B.dylib 0x9826efbd _pthread_start + 345
16 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 28: Java: TimerQueue
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 libclient.dylib 0x0280ef23 JNI_CreateJavaVM_Impl + 57203
3 libclient.dylib 0x0280edab JNI_CreateJavaVM_Impl + 56827
4 libclient.dylib 0x028b8c95 JVM_MonitorWait + 5461
5 libclient.dylib 0x028b7bfe JVM_MonitorWait + 1214
6 libclient.dylib 0x028b787a JVM_MonitorWait + 314
7 ??? 0x0480b839 0 + 75544633
8 ??? 0x04803db1 0 + 75513265
9 ??? 0x0480428d 0 + 75514509
10 ??? 0x048012d3 0 + 75502291
11 libclient.dylib 0x028a57d0 JVM_Lseek + 149024
12 libclient.dylib 0x028a5576 JVM_Lseek + 148422
13 libclient.dylib 0x028b711b JVM_InternString + 2123
14 libclient.dylib 0x028b6f8a JVM_InternString + 1722
15 libclient.dylib 0x028b6d74 JVM_InternString + 1188
16 libclient.dylib 0x028b680f JVM_StartThread + 2175
17 libclient.dylib 0x0280e33b JNI_CreateJavaVM_Impl + 54155
18 libSystem.B.dylib 0x9826efbd _pthread_start + 345
19 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 29:
0 libSystem.B.dylib 0x98267182 __workq_kernreturn + 10
1 libSystem.B.dylib 0x98267718 _pthread_wqthread + 941
2 libSystem.B.dylib 0x98267336 start_wqthread + 30
Thread 30:
0 libSystem.B.dylib 0x98260856 select$DARWIN_EXTSN + 10
1 com.apple.CoreFoundation 0x93098ddd __CFSocketManager + 1085
2 libSystem.B.dylib 0x9826efbd _pthread_start + 345
3 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 31:
0 libSystem.B.dylib 0x982418da mach_msg_trap + 10
1 libSystem.B.dylib 0x98242047 mach_msg + 68
2 com.apple.opengl 0x994d1edb glcDebugListener + 426
3 libSystem.B.dylib 0x9826efbd _pthread_start + 345
4 libSystem.B.dylib 0x9826ee42 thread_start + 34
Thread 32:
0 libSystem.B.dylib 0x98267182 __workq_kernreturn + 10
1 libSystem.B.dylib 0x98267718 _pthread_wqthread + 941
2 libSystem.B.dylib 0x98267336 start_wqthread + 30
Thread 33:
Thread 2 crashed with X86 Thread State (32-bit):
eax: 0x00000002 ebx: 0x00000001 ecx: 0x02e008e0 edx: 0x03001438
edi: 0x00000007 esi: 0x00000001 ebp: 0xb0903ae8 esp: 0xb09039e0
ss: 0x0000001f efl: 0x00010217 eip: 0x028baf97 cs: 0x00000017
ds: 0x0000001f es: 0x0000001f fs: 0x0000001f gs: 0x00000037
cr2: 0x00000005
Binary Images:
0x1000 - 0x1ff7 +dr.app.beast 1.5.3 (???) <7B3B2C5A-15F9-F987-D83F-D689A43FE7AE> /Users/sujp/Desktop/beast/BEAST v1.5.3.app/Contents/MacOS/JavaApplicationStub
0x6000 - 0x10ff7 com.apple.JavaApplicationLauncher 13.1.0 (13.1.0) <4AC23F10-15F8-A81C-A1A0-89FA16CC14FB> /System/Library/PrivateFrameworks/JavaApplicationLauncher.framework/Versions/A/JavaApplicationLauncher
0x18000 - 0x1fff7 com.apple.JavaVM 13.1.0 (13.1.0) <2842C4EE-869D-81E6-E771-062F583A1044> /System/Library/Frameworks/JavaVM.framework/Versions/A/JavaVM
0x3c000 - 0x4afe7 libSimplifiedChineseConverter.dylib ??? (???) <4C9CC2D9-2F13-4465-5447-2516FCD9255B> /System/Library/CoreServices/Encodings/libSimplifiedChineseConverter.dylib
0x88000 - 0x90ff7 libverify.dylib ??? (???) <0E0C6835-68C5-A72F-8CA0-77857B632513> /System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries/libverify.dylib
0x95000 - 0x9cff7 JavaNativeFoundation ??? (???) <1107BBC2-DFC1-CF1F-44EE-27F7D4349BE6> /System/Library/Frameworks/JavaVM.framework/Versions/A/Frameworks/JavaNativeFoundation.framework/Versions/A/JavaNativeFoundation
0xa5000 - 0xc2ff7 libjava.jnilib ??? (???) <C4C57812-6A25-85AB-441B-DE1A71A8DF18> /System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries/libjava.jnilib
0xdf000 - 0xebff7 libzip.jnilib ??? (???) <1317EACC-2494-70C3-4B43-FC9D04579EAF> /System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries/libzip.jnilib
0x2800000 - 0x2bf6fe7 libclient.dylib ??? (???) <6B8B4A7E-2844-3AD6-239E-122121D37485> /System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries/libclient.dylib
0x2cad000 - 0x2caeff7 liblauncher.jnilib ??? (???) <10117357-AD34-E263-4132-902438F8C368> /System/Library/PrivateFrameworks/JavaApplicationLauncher.framework/Versions/A/Resources/liblauncher.jnilib
0x2f7f000 - 0x2f82fe7 com.apple.java.JavaRuntimeSupport 13.1.0 (13.1.0) <70CFA5B6-4FFA-8EFB-E4CE-202B0B9A4DB6> /System/Library/Frameworks/JavaVM.framework/Versions/A/Frameworks/JavaRuntimeSupport.framework/Versions/A/JavaRuntimeSupport
0x4cbf4000 - 0x4cbf7ff7 liblaf.jnilib ??? (???) <373D235D-3372-814D-DDB5-11C1C750A48B> /System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries/liblaf.jnilib
0x4cd00000 - 0x4cec2ff7 libawt.jnilib ??? (???) <FF31ED82-3BB5-A05D-3B83-35E11590E529> /System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries/libawt.jnilib
0x4cfe2000 - 0x4cfefff7 libnet.jnilib ??? (???) <E14CEE5F-42DC-9727-6A3E-FE25EAFFB423> /System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries/libnet.jnilib
0x4cff5000 - 0x4cff8ff7 libnio.jnilib ??? (???) <6AE890EE-BB11-6931-EEBF-01AE9D682E3F> /System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries/libnio.jnilib
0x61d2b000 - 0x61d8eff7 libfontmanager.jnilib ??? (???) <78446877-99AA-82F5-8509-0281A5740A47> /System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries/libfontmanager.jnilib
0x64784000 - 0x647a0ff7 GLRendererFloat ??? (???) <8FF7B576-512C-C2F8-4C0C-967FB3D9EEA2> /System/Library/Frameworks/OpenGL.framework/Resources/GLRendererFloat.bundle/GLRendererFloat
0x6bfbf000 - 0x6bfc4ff7 com.apple.qldisplay.Text 2.1 (327.3) <CB779C7C-AA8E-14BC-735F-DE4F570351CF> /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuickLookUI.framework/Versions/A/Resources/DisplayBundles/Text.qldisplay/Contents/MacOS/Text
0x6bfca000 - 0x6bfceff7 com.apple.qldisplay.Generic 2.1 (327.3) <A06D5850-3655-42F6-18A3-70A69D241750> /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuickLookUI.framework/Versions/A/Resources/DisplayBundles/Generic.qldisplay/Contents/MacOS/Generic
0x6c800000 - 0x6c971ff7 GLEngine ??? (???) <D336658A-F6DB-6D61-9CA6-04299E7D5420> /System/Library/Frameworks/OpenGL.framework/Resources/GLEngine.bundle/GLEngine
0x6c9a2000 - 0x6cda8fef libclh.dylib ??? (???) <3ACD0D90-B1E9-59DA-729E-7E97092F9A24> /System/Library/Extensions/GeForce8xxxGLDriver.bundle/Contents/MacOS/libclh.dylib
0x6d100000 - 0x6d209ff3 +libhmsbeagle-jni.jnilib ??? (???) <DE67F7DC-7252-D53F-BA9F-0737451035B5> /usr/local/lib/libhmsbeagle-jni.jnilib
0x6d227000 - 0x6d32fffb +libhmsbeagle-1.0.1.dylib ??? (???) <21ECB88C-DBF5-AFF2-0D1F-5BDA0B0760C7> /usr/local/lib/libhmsbeagle-1.0.1.dylib
0x70000000 - 0x70439fef +libcuda.dylib ??? (???) <DF7CD988-A577-F8F9-3AE5-C927F4EFB85B> /usr/local/cuda/lib/libcuda.dylib
0x8f611000 - 0x8fa52fe7 com.apple.GeForce8xxxGLDriver 1.6.6 (6.0.6) <205911D0-3CE3-D53C-289B-319A4E4BA153> /System/Library/Extensions/GeForce8xxxGLDriver.bundle/Contents/MacOS/GeForce8xxxGLDriver
0x8fe00000 - 0x8fe4162b dyld 132.1 (???) <211AF0DD-42D9-79C8-BB6A-1F4BEEF4B4AB> /usr/lib/dyld
0x90003000 - 0x90003ff7 com.apple.vecLib 3.5 (vecLib 3.5) <17BEEF92-DF30-CD52-FD65-0B7B43B93617> /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib
0x90004000 - 0x90004ff7 com.apple.quartzframework 1.5 (1.5) <CEB78F00-C5B2-3B3F-BF70-DD6D578719C0> /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x903ce000 - 0x903d1ff7 libCGXType.A.dylib ??? (???) <483FCF1C-066B-D210-7355-ABC48CA9DB2F> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libCGXType.A.dylib
0x903d2000 - 0x903e6fe7 libbsm.0.dylib ??? (???) <14CB053A-7C47-96DA-E415-0906BA1B78C9> /usr/lib/libbsm.0.dylib
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0x96f87000 - 0x96fbeff7 com.apple.CoreMedia 0.420.18 (420.18) <43747711-B334-B0C7-4971-15FA586DAFBF> /System/Library/PrivateFrameworks/CoreMedia.framework/Versions/A/CoreMedia
0x96fbf000 - 0x96fc9ffb com.apple.speech.recognition.framework 3.11.1 (3.11.1) <EC0E69C8-A121-70E8-43CF-E6FC4C7779EC> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition
0x96fca000 - 0x97043ff7 com.apple.PDFKit 2.5 (2.5) <58603BDB-337F-FBE3-EB11-7C31CF261995> /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x97044000 - 0x9709efe7 com.apple.CorePDF 1.1 (1.1) <8ED0FB5F-D498-D012-DF09-DE5378D40D52> /System/Library/PrivateFrameworks/CorePDF.framework/Versions/A/CorePDF
0x9709f000 - 0x9709fff7 com.apple.Accelerate 1.5 (Accelerate 1.5) <F642E7A0-3720-FA19-0190-E6DBD9EF2D9B> /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
0x970d3000 - 0x971b0ff7 com.apple.vImage 4.0 (4.0) <64597E4B-F144-DBB3-F428-0EC3D9A1219E> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
0x9734c000 - 0x97426ff3 com.apple.DesktopServices 1.5.3 (1.5.3) <DA02AC94-7B0C-BD75-2305-C46A307A5FB0> /System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv
0x97427000 - 0x9742bff7 libGFXShared.dylib ??? (???) <79F4F60E-0A6D-CE9C-282E-FA85825449E3> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x97c8f000 - 0x97d93fe7 libcrypto.0.9.8.dylib ??? (???) <2E58547A-91CC-4C1A-9FCC-DA7515FDB68A> /usr/lib/libcrypto.0.9.8.dylib
0x97d94000 - 0x97d95ff7 com.apple.audio.units.AudioUnit 1.6.2 (1.6.2) <845D5E0D-870D-B7E8-AAC5-8364AC341AA1> /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
0x97d96000 - 0x97dbcfff com.apple.DictionaryServices 1.1.1 (1.1.1) <02709230-9B37-C743-6E27-3FCFD18211F8> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/DictionaryServices.framework/Versions/A/DictionaryServices
0x97dbd000 - 0x97dc4fff com.apple.print.framework.Print 6.0 (237) <7A06B15C-B835-096E-7D96-C2FE8F0D21E1> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x97dc5000 - 0x97e36ff7 com.apple.iLifeMediaBrowser 2.1.3 (346.0.3) <C862CAE1-1906-CD45-7D66-F8798483BAA5> /System/Library/PrivateFrameworks/iLifeMediaBrowser.framework/Versions/A/iLifeMediaBrowser
0x97e37000 - 0x97f63feb com.apple.audio.toolbox.AudioToolbox 1.6.2 (1.6.2) <9AAFDCBE-C68C-3BB3-8089-83CD2C0B4ED7> /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox
0x981e6000 - 0x98240ff7 com.apple.framework.IOKit 2.0 (???) <1BE07087-27D5-0E62-F06B-007C2BED4073> /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
0x98241000 - 0x983e5feb libSystem.B.dylib ??? (???) <D45B91B2-2B4C-AAC0-8096-1FC48B7E9672> /usr/lib/libSystem.B.dylib
0x983e6000 - 0x98568fe7 libicucore.A.dylib ??? (???) <2B0182F3-F459-B452-CC34-46FE73ADE348> /usr/lib/libicucore.A.dylib
0x98569000 - 0x9865fff7 libGLProgrammability.dylib ??? (???) <82D03736-D30C-C013-BBB1-20ED9687D47F> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x98680000 - 0x98782fef com.apple.MeshKitIO 1.0 (49.0) <E4436373-BF5D-9644-F8B7-B72762BEC08B> /System/Library/PrivateFrameworks/MeshKit.framework/Versions/A/Frameworks/MeshKitIO.framework/Versions/A/MeshKitIO
0x98783000 - 0x98786fe7 libmathCommon.A.dylib ??? (???) <1622A54F-1A98-2CBE-B6A4-2122981A500E> /usr/lib/system/libmathCommon.A.dylib
0x98787000 - 0x987d0fe7 libTIFF.dylib ??? (???) <5864AE5B-EAEB-F8B6-18FB-3D27B7895A4C> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib
0x98822000 - 0x98855ff7 com.apple.AE 496.1 (496.1) <1AC75AE2-AF94-2458-0B94-C3BB0115BA4B> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE
0x98856000 - 0x9886affb com.apple.speech.synthesis.framework 3.10.35 (3.10.35) <57DD5458-4F24-DA7D-0927-C3321A65D743> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis
0x9886b000 - 0x98907fe7 com.apple.ApplicationServices.ATS 4.1 (???) <EA26375D-8276-9671-645D-D28CAEC95292> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
0x989ff000 - 0x98d1efe7 com.apple.CoreServices.CarbonCore 861.2 (861.2) <A9077470-3786-09F2-E0C7-F082B7F97838> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore
0x98d1f000 - 0x98d6cfeb com.apple.DirectoryService.PasswordServerFramework 6.0 (6.0) <BF66BA5D-BBC8-78A5-DBE2-F9DE3DD1D775> /System/Library/PrivateFrameworks/PasswordServer.framework/Versions/A/PasswordServer
0x98d6d000 - 0x98fcffe7 com.apple.security 6.1.1 (37594) <9AA7D9BF-852F-111F-68AD-65DD760D4DF3> /System/Library/Frameworks/Security.framework/Versions/A/Security
0x99011000 - 0x9901cff7 libCSync.A.dylib ??? (???) <9292E6E3-70C1-1DD7-4213-1044F0FA8381> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libCSync.A.dylib
0x9901d000 - 0x99452ff7 libLAPACK.dylib ??? (???) <5E2D2283-57DE-9A49-1DB0-CD027FEFA6C2> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
0x99453000 - 0x994cdfef com.apple.audio.CoreAudio 3.2.2 (3.2.2) <1F97B48A-327B-89CC-7C01-3865179716E0> /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio
0x994ce000 - 0x994dbff7 com.apple.opengl 1.6.5 (1.6.5) <0AE8B897-8A80-2C14-D6FC-DC21AC423234> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0xffff0000 - 0xffff1fff libSystem.B.dylib ??? (???) <D45B91B2-2B4C-AAC0-8096-1FC48B7E9672> /usr/lib/libSystem.B.dylib
Model: MacPro2,1, BootROM MP21.005C.B01, 4 processors, 2.70 GHz, 6 GB, SMC 1.13f3
Graphics: NVIDIA GeForce GTX 295, NVIDIA GeForce GTX 295, PCIe, 896 MB
Graphics: NVIDIA GeForce GTX 295, NVIDIA GeForce GTX 295, PCIe, 896 MB
Memory Module: global_name
Network Service: 以太网适配器?en0?, PPP (PPPoE), ppp0
Serial ATA Device: ST31000528AS, 931.51 GB
Parallel ATA Device: PIONEER DVD-RW DVR-118L
USB Device: USB2.0 Camera, 0x1871 (Aveo Technology Corp.), 0x01f0, 0xfd400000
in the command line I tried ./beast -java -beagle <xml file>, and found beast run slower than using ./beast <xml file>. here is some infomation:
Using BEAGLE TreeLikelihood
Branch rate model used: strictClockBranchRates
No external BEAGLE resources available, or resource list/requirements not met, using Java implementation
Ignoring ambiguities in tree likelihood.
With 70 unique site patterns.
Partials scaling scheme used: dynamicRescaling
Using BEAGLE TreeLikelihood
Branch rate model used: strictClockBranchRates
No external BEAGLE resources available, or resource list/requirements not met, using Java implementation
Ignoring ambiguities in tree likelihood.
With 59 unique site patterns.
Partials scaling scheme used: dynamicRescaling
Using BEAGLE TreeLikelihood
Branch rate model used: strictClockBranchRates
No external BEAGLE resources available, or resource list/requirements not met, using Java implementation
Ignoring ambiguities in tree likelihood.
With 148 unique site patterns.
by the way, the computer OS is snow leopard 10.6.2. the the CUDA driver 3.0.1beta, CUDA toolkit 3.0 and GPU compute SDK 3.0 installed successfully.
I 'm looking forward to reply.
Jack
Alex
Feb 6, 2010, 10:12:02 PM2/6/10
to beast-users
Hi,
I'm having the same or similar issue. I don't have a solution, but I
may have some more details.
Mac, OS 10.6 Snow Leopard.
I followed the instructions posted on the Wiki for a Mac install of
the beagle-lib: http://beast.bio.ed.ac.uk/BEAGLE_on_Mac_OS_X
When I run with Show List of Resources, I get the expected list of 0:
CPU and 1: GPU. However when I try and do a normal run using the
benchmark.xml file and Use Beagle selected ( and either favor GPU or
CPU selected ) the program crashes out on me.
Using the suggestions foud here: http://tinyurl.com/ydsg645 (also this
google group), I used the command line command:
java -Xms256m -Xmx512m -Dbeagle.resource.order="1,0" -
Djava.library.path=/usr/local/lib -cp /Applications/Phylogenetics/
BEAST/BEAST\ v1.5.3.app/Contents/Resources/Java/beast.jar:/
Applications/Phylogenetics/BEAST/BEAST\ v1.5.3.app/Contents/Resources/
Java/beast-beagle.jar dr.app.beast.BeastMain -beagle benchmark.xml
Which ran fine but got me back to the error:
Failed to load BEAGLE library: /usr/local/lib/libhmsbeagle-
jni.jnilib: no suitable image found. Did find: /usr/local/lib/
libhmsbeagle-jni.jnilib: mach-o, but wrong architecture
This was the error that was solved in the GUI interface by setting the
program to run in 32-bit mode, so I added the flag -d32 to the
command. Now when I run it, the command line version crashes out
with:
Parsing XML file: benchmark.xml
File encoding: MacRoman
looking for plugins in/Applications/Phylogenetics/BEAST/examples/
Benchmark/plugins
Read alignment, ':alignment
Sequences = 17
Sites = 1485
Datatype = nucleotide
Site patterns 'patterns' created from positions 1-1485 of alignment
'alignment'
pattern count = 138
Creating the tree model, 'treeModel'
initial tree topology =
((((((D4NewCal81,D4Thai63),D4Indon77),D4Tahiti79),
(D4ElSal94,D4SLanka78)),(((D4Philip84,D4Thai84),D4Philip64),
(D4ElSal83,D4Indon76))),((((D4Brazi82,D4Tahiti85),
(D4Mexico84,D4PRico86)),D4Thai78),D4Philip56))
tree height = 874.5878784736065
Using strict molecular clock model.
Creating state frequencies model: Using empirical frequencies from
data = {0.30751, 0.18768, 0.27245, 0.23236}
Creating HKY substitution model. Initial kappa = 1.0
diff = 1.0E-10 freq = 1.0E-10
Creating site model:
4 category discrete gamma with initial shape = 0.5
Using BEAGLE TreeLikelihood
Branch rate model used: strictClockBranchRates
Invalid memory access of location 0x5 eip=0x3baf97
Bus error
Any help is appreciated.
Thanks,
-Alex-
Marc Suchard
Feb 7, 2010, 1:41:37 PM2/7/10
to beast-users
Hi Alex --
Last month, BEAGLE was overhauled for use in GARLI and MrBayes. My
guess is that a new memory management bug has snuck into the code.
When did you download and compile BEAGLE?
best, Marc
On Feb 7, 4:12 pm, Alex <ahol...@gmail.com> wrote:
> Hi,
>
> I'm having the same or similar issue. I don't have a solution, but I
> may have some more details.
> Mac, OS 10.6 Snow Leopard.
>
> I followed the instructions posted on the Wiki for a Mac install of
> the beagle-lib:http://beast.bio.ed.ac.uk/BEAGLE_on_Mac_OS_X
>
> When I run with Show List of Resources, I get the expected list of 0:
> CPU and 1: GPU. However when I try and do a normal run using the
> benchmark.xml file and Use Beagle selected ( and either favor GPU or
> CPU selected ) the program crashes out on me.
>
> Using the suggestions foud here:http://tinyurl.com/ydsg645(also this
Alex
Feb 8, 2010, 9:02:24 AM2/8/10
to beast-users
I initially compiled only a couple of weeks ago, then when I continued
having problems and found the Beagle on OSX tutorial started again
from the SVN this weekend to make sure I followed the instructions to
the letter.
having problems and found the Beagle on OSX tutorial started again
from the SVN this weekend to make sure I followed the instructions to
the letter.
Until the bug is chased down, should I downgrade to an earlier
version? If so, what version would you suggest.
Let me know if there's anything I can send you that would help. Crash
reports, console dumps, etc...
I'm excited about the MrBayes integration. Once this bug is worked
out I look forward for a quick wiki tutorial on getting the two to
play well together.
Thanks,
-Alex-
ramonf
Feb 9, 2010, 5:56:58 AM2/9/10
to beast-users
On Linux I use BEAGLE svn checkout rev 630 (instead of rev 700 which
gives me problems) and BEAST v1.5.2. However my speed-up is very
modest on TESLA 1060. For some reason BEAST v1.5.3 doesn't catch my
GPU .. just runs it on CPU. Currently investigating.
gives me problems) and BEAST v1.5.2. However my speed-up is very
modest on TESLA 1060. For some reason BEAST v1.5.3 doesn't catch my
GPU .. just runs it on CPU. Currently investigating.
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