SNAPP: Restarting an interrupted run

[Lilnet Cloud]

I would like to know if there is any way to restart an interrupted SNAPP run which has been running for 2 months. I am using the GUI to run SNAPP.

Greatly appreciate any suggestions!

Cheers,
Elize

[Remco Bouckaert]

Hi Elize,

Restarting a run from the GUI can be done by selecting “resume: append log to existing files (if any)” in the drop-down box just below the entry for selecting the XML file.

Since you mention that SNAPP runs quite slow, you might want to experiment with the number of threads — more threads may help but is not always better, depending on your analysis.

Cheers,

Remco

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[Dianne Velasco]

How do you do you resume a run when using the command line? Is there an option that needs to be added?

Thanks,

Dianne

[Remco Bouckaert]

There is the ‘resume’ flag, so calling

/path/to/beast -resume /path/to/snap.xml

(where /path/to replaced with the appropriate directories for your computer) should resume the run.

Make sure you do this from the directory where the log, tree and state files of the interrupted runs are.

Cheers,

Remco