Hello I currently try to use thorney-BEAST for the analysis of SARS-CoV-2 samples, and i followed the instructions in the [thorney_beast.xml] document to create my XML file. However when I try to running in BEAST the following error messages appear:
SEVERE: Parsing error - poorly formed BEAST file, V.1.10.4Tutorial_tbeast_NonR_test.xml:
The '' element, with id, 'treeLikelihood', is incorrectly constructed.
The following was expected:
Exactly one ELEMENT of type ThorneyBranchLengthLikelihoodDelegate REQUIRED
Error thrown at: dr.xml.AbstractXMLObjectParser.parseXMLObject(Unknown Source)
BEAST X v10.5.0-beta4
Error in input BEAST XML file, V.1.10.4Tutorial_tbeast_NonR_test.xml:
The '' element, with id, 'treeLikelihood', is incorrectly constructed.
The following was expected:
Exactly one ELEMENT of type MutationBranchMap REQUIRED
BEAST v1.10.4 Prerelease
SEVERE: Parsing error - poorly formed BEAST file, V.1.10.4Tutorial_tbeast_NonR_test.xml:
Object with idref=treeModel has not been parsed.
Error thrown at: dr.xml.XMLParser.convert(Unknown Source)
Could some one explain how to fixed the XML file? or if there is another previews step that is requiered to do?
Many thanks
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