nonsynonymus and synonymus mutation

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Vaca

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Nov 23, 2017, 12:55:11 PM11/23/17
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Dear all


Is there any program to calculate absolute number nonsynonymus and synonymus mutations in alignment?

Thanks

Guy Baele

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Nov 24, 2017, 3:00:02 PM11/24/17
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Depending on what it is exactly you want, you could do this in BEAST.
In the following paper, we use a codon substitution model to estimate absolute rates of synonymous and non-synonymous substitution:

Best regards,
Guy


Op donderdag 23 november 2017 18:55:11 UTC+1 schreef Vaca:
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