Dear all,
I hope that you can help me. I'm new to beast and keep getting the following error:
The individual components of the posterior are as follows:
The initial posterior is zero:
CompoundLikelihood(compoundModel)=(
Uniform(tmrca(untitled1))=-Inf,
Gamma(ac)=-3.184,
Gamma(ag)=-3.1687,
Gamma(at)=-3.184,
Gamma(cg)=-3.184,
Gamma(gt)=-3.184,
Uniform(frequencies)=0.0,
Exponential(alpha)=-0.3069,
Exponential(ucld.stdev)=0.0986,
CTMCScalePrior(ctmcScalePrior)=-1.5581,
Uniform(yule.birthRate)=-230.2585,
BirthDeathGernhard08Model/yule(treeModel)=-1115.2126
Total = -Infinity
),
CompoundLikelihood(compoundModel)=(
BeagleTreeLikelihood(treeLikelihood)=-222515.5008,
DiscretizedBranchRates(discretizedBranchRates[branchRates])=-799.89
Total = -223315.39086164942
)
Total = -Infinity
java.lang.RuntimeException: Terminate
at dr.app.beast.BeastMain.<init>(Unknown Source)
at dr.app.beast.BeastMain.main(Unknown Source)
I do have a starting tree (a RaxML best tree) and I have not assigned any monophyllies to my data set (as suggested by other posts that if the assigned monophylly and the one in the tree aren't the same you will get this error) . I really don't know what is going wrong here. I rather not assign a monophylly as I want beast to go through my data independently. I really hope that you can help me.
My best
Setareh