Returning specific tip dates in logs (FBD+SA)

[Jo Baker]

Dear all, 

I have specified a FBD analysis incorporating sampled age ranges using the following code syntax which is working perfectly as expected.

<operator spec="sa.evolution.operators.SampledNodeDateRandomWalker" windowSize="1" tree="@Tree.t:fbd_tree" treeWOffset="@treeWOffset" weight ="10" taxonset="@taxonset.all">

    <samplingDates id="Taxon1.Date" spec="sa.evolution.tree.SamplingDate" taxon="Taxon1" upper="0.5" lower="0.3"/>

</operator

However, I can't seem to find the right syntax to add estimated tip dates to the log file. I seem to be missing something that converts 'SamplingDate's into a loggable object - but cannot find any documentation on how to do so. Could somebody please advise on how to do this? 

For example, both of the following commands:

<log id="test.date" spec="sa.evolution.tree.SamplingDate" taxon="Taxon1"/>

<log idref="Taxon1.Date"/>

 return an identical following error:

type mismatch for input log. beast.base.core.Loggable.isAssignableFrom(class sa.evolution.tree.SamplingDate)=false expected 'Loggable' but got 'SamplingDate'

Thanks in advance for your help,

[Omar Idris]

It has to do with lovable versus .SamplingDate

ONI

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[Jo Baker]

Sorry I'm not sure I understand what you mean. Have you managed to identify what id would be need to convert the sampled dates to a loggable value?

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