Difficulty in interpreting TempEST output
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Sakshi Kamboj
Nov 30, 2021, 12:00:47 PM11/30/21
to beast-users
Hi all
Date range 19
Slope (rate) -0.0001
X-Intercept (TMRCA) 4360.2931
Correlation Coefficient -0.0622
R squared 3.8652E-3
Residual Mean Squared 2.0068E-4
I am trying to assess the temporal structure of my sequence data (95 sequences) using TempEST. For this, I used IQ-Tree for reconstructing the phylogenetic tree file and provided as input to TempEST as suggested in TempEST tutorial but my results show negative correlation with the values:
Date range 19
Slope (rate) -0.0002
X-Intercept (TMRCA) 2494.8607
Correlation Coefficient -0.0096
R squared 9.3007E-5
Residual Mean Squared 2.0857E-2
After Best-fitting the root:
Date range 19
Slope (rate) -0.0001
X-Intercept (TMRCA) 4360.2931
Correlation Coefficient -0.0622
R squared 3.8652E-3
Residual Mean Squared 2.0068E-4
Can anyone help me to interpret my result?
I want to carry out phylodynamic analysis on this sequence data but right now it is rendered not suitable for the same. I am new in this field. Kindly help me.
Hoping for positive response
Sakshi
Brandon Stark
Dec 20, 2021, 4:59:08 AM12/20/21
to beast-users
no temporal signal for your data.
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