Dear all,
I am trying to use BEAST to experiment with humanistic data. I have converted this data into "morphological data" in the below format. I have enabled the relevant MM package in BEAST.
BEGIN DATA;
DIMENSIONS NTAX=78 NCHAR=24;
FORMAT DATATYPE=STANDARD MISSING=? GAP=- SYMBOLS="0123456789";
;
MATRIX
111 150212200050302101000010
112 025010021000021100101120
113 030010021000011102001050
...
;
END;
This data uploads into BEAUTi well. My issue now is that while for some taxons I have a trusted tip date, for most I do not. How can I use the tip data I do have while getting estimates for the rest? Can I simply enter known tip dates (in my case, years) when I do have them in the "tip dates" tab, while leaving the value for those to be estimated as "0", as in the attached screenshot? I expect all my tips to fall in the range 1400-1800, and "uniform" distribution is what I want.
I have experimented setting up priors and parameters in the xml file directly but due to my limited experience this is proving very finicky. Any simple solutions are greatly appreciated! 