The best-fit model according to AICc using ModelFinder is : HIVw+F+I+G4
However, may I know which substitution model should I choose as both BEAST version did not have HIVw option as shown in the printscreen below?
BEASTv.1.10.4
BEASTv2.6.7
In addition, how to specify 'F' (empirical frequencies)? I only see empirical frequencies option if the HKY substitution model is chosen (nucleotide). However, my data type is amino acids.
On 3/05/2022, at 11:43 AM, Ching Ching WEE <wching...@gmail.com> wrote:
Dear BEAST User
The best-fit model according to AICc using ModelFinder is : HIVw+F+I+G4
However, may I know which substitution model should I choose as both BEAST version did not have HIVw option as shown in the printscreen below?
<2022-05-03 02_35_05-BEAUtiv.1.10.4.png>
BEASTv.1.10.4
<2022-05-03 02_35_47-BEAUti 2_ Standard.png>
BEASTv2.6.7
In addition, how to specify 'F' (empirical frequencies)? I only see empirical frequencies option if the HKY substitution model is chosen (nucleotide). However, my data type is amino acids.
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<2022-05-03 02_35_05-BEAUtiv.1.10.4.png><2022-05-03 02_35_47-BEAUti 2_ Standard.png>