Dear all,
Beast 2 reported some error when I tried to analyse some data via phylogeography.
Please help me!
Kind regards
Starting frequencies: [0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1]
AncestralStateTreeLikelihood(traitedtreeLikelihood.location) uses BeerLikelihoodCore
AlignmentFromTrait(location): [taxa, patterns, sites] = [59, 1, 1]
java.lang.RuntimeException: Reconstruction not implemented for multiple categories yet.
at beastclassic.evolution.likelihood.AncestralStateTreeLikelihood.initAndValidate(Unknown Source)
at beast.base.parser.XMLParser.initBEASTObjects(Unknown Source)
at beast.base.parser.XMLParser.parse(Unknown Source)
at beast.base.parser.XMLParser.parseFile(Unknown Source)
at beastfx.app.beast.BeastMCMC.parseArgs(Unknown Source)
at beastfx.app.beast.Controller$2.run(Unknown Source)
beast.base.parser.XMLParserException:
Error 110 parsing the xml input file
validate and intialize error: Reconstruction not implemented for multiple categories yet.
Error detected about here:
<beast>
<run id='mcmc' spec='MCMC'>
<distribution id='posterior' spec='CompoundDistribution'>
<distribution id='likelihood' spec='CompoundDistribution'>
<distribution id='traitedtreeLikelihood.location' spec='beastclassic.evolution.likelihood.AncestralStateTreeLikelihood'>
at beast.base.parser.XMLParser.initBEASTObjects(Unknown Source)
at beast.base.parser.XMLParser.parse(Unknown Source)
at beast.base.parser.XMLParser.parseFile(Unknown Source)
at beastfx.app.beast.BeastMCMC.parseArgs(Unknown Source)
at beastfx.app.beast.Controller$2.run(Unknown Source)