Error with MultiMonophyleticConstraint

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Tarani Jindal

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Jan 23, 2024, 6:50:44 PMJan 23
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Hello.
I am a BEAST 2.4.7. user. I generated an XML file with 129 sequences and tried to run it, however, I got an error below.
The error appears when I add a newick tree to the MultiMonophyleticConstraint.

Start likelihood: -Infinity after 10 initialisation attempts
P(posterior) = -Infinity (was -Infinity)
P(prior) = -Infinity (was -Infinity)

P(FBD.t:part1) = -263.6778938478095 (was -263.6778938478095)
P(MultiMonophyleticConstraint.t:part1) = -Infinity (was -Infinity)
P(ORCRatePriorDistribution.c:part1) = -1095.793286120492 (was -1095.793286120492)
P(ORCsigmaPrior.c:part1) = 1.3628558876856076 (was 1.3628558876856076)
P(ORCucldMeanPrior.c:part1) = -2.7232296703330143 (was -2.7232296703330143)
P(diversificationRatePriorFBD.t:part1) = 0.0 (was 0.0)
P(GammaShapePrior.s:part1) = -1.0 (was -1.0)
P(GammaShapePrior.s:part2) = -1.0 (was -1.0)
P(GammaShapePrior.s:part3) = -1.0 (was -1.0)
P(KappaPrior.s:part2) = -1.8653600339742873 (was -1.8653600339742873)
P(originPriorFBD.t:part1) = 0.0 (was 0.0)
P(RateACPrior.s:part1) = -3.184008455701433 (was -3.184008455701433)
P(RateACPrior.s:part3) = -3.184008455701433 (was -3.184008455701433)
P(RateAGPrior.s:part1) = -3.1686658147294304 (was -3.1686658147294304)
P(RateAGPrior.s:part3) = -3.1686658147294304 (was -3.1686658147294304)
P(RateATPrior.s:part1) = -3.184008455701433 (was -3.184008455701433)
P(RateATPrior.s:part3) = -3.184008455701433 (was -3.184008455701433)
P(RateCGPrior.s:part1) = -3.184008455701433 (was -3.184008455701433)
P(RateCGPrior.s:part3) = -3.184008455701433 (was -3.184008455701433)
P(RateGTPrior.s:part1) = -3.184008455701433 (was -3.184008455701433)
P(RateGTPrior.s:part3) = -3.184008455701433 (was -3.184008455701433)
P(samplingProportionPriorFBD.t:part1) = 0.0 (was 0.0)
P(turnoverPriorFBD.t:part1) = 0.0 (was 0.0)
P(DM1.prior) = NaN (was NaN)  **
P(VP1.prior) = NaN (was NaN)  **

P(likelihood) = NaN (was NaN)  **

P(treeLikelihood.part1) = NaN (was NaN)  **
P(treeLikelihood.part2) = NaN (was NaN)  **
P(treeLikelihood.part3) = NaN (was NaN)  **

java.lang.RuntimeException: Could not find a proper state to initialise. Perhaps try another seed.
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