Hye,
I am wondering to implement the model TPM3uf+G in Beauti. Is it possible to get it directly through beauti parameters ? Or do we need to modify the xml file, and in this case how to manage it ? I get the
http://beast.bio.ed.ac.uk/Substitution-model-code but the TPM3uf+G model is not implemented in, and the principe of modification of the xml file is not clear for me, even if I understand the blocks to modify (gtr model, operators, file log etc...)
In jModeltest manual, the parameters given are
TPM3uf 5 unequal AC=CG;AT=GT;AG=CT
how to translate that in the substitution model in xml ?
Thanks a lot for help
Catherine