problem

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Brandon Stark

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Dec 19, 2021, 10:08:56 PM12/19/21
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The individual components of the posterior are as follows:
The initial posterior is zero:
  CompoundLikelihood(compoundModel)=(
    LogNormal(1stpos.kappa1)=-1.8654,
    LogNormal(1stpos.kappa2)=-1.8654,
    MultivariateDistributionLikelihood(dirichletDistribution)=1.7918,
    Exponential(1stpos.alpha)=-0.3069,
    Uniform(1stpos.pInv)=0.0,
    LogNormal(2ndpos.kappa1)=-1.8654,
    LogNormal(2ndpos.kappa2)=-1.8654,
    MultivariateDistributionLikelihood(dirichletDistribution)=1.7918,
    Uniform(2ndpos.pInv)=0.0,
    MultivariateDistributionLikelihood(dirichletDistribution)=-5.9631,
    MultivariateDistributionLikelihood(dirichletDistribution)=1.7918,
    Exponential(3rdpos.alpha)=-0.3069,
    Uniform(3rdpos.pInv)=0.0,
    LogNormal(rRNA.kappa1)=-1.8654,
    LogNormal(rRNA.kappa2)=-1.8654,
    MultivariateDistributionLikelihood(dirichletDistribution)=1.7918,
    Exponential(rRNA.alpha)=-0.3069,
    Uniform(rRNA.pInv)=0.0,
    LogNormal(dloop.kappa)=-1.8654,
    MultivariateDistributionLikelihood(dirichletDistribution)=1.7918,
    Exponential(dloop.alpha)=-0.3069,
    Uniform(dloop.pInv)=0.0,
    LogNormal(tRNA.kappa)=-1.8654,
    MultivariateDistributionLikelihood(dirichletDistribution)=1.7918,
    Uniform(tRNA.pInv)=0.0,
    MultivariateDistributionLikelihood(dirichletDistribution)=4.7875,
    CTMCScalePrior(ctmcScalePrior)=-43097.115,
    Exponential(ucld.stdev)=0.0986,
    LogNormal(bdss.birthRate)=-2.0385,
    Uniform(bdss.relativeDeathRate)=0.0,
    LogNormal(bdss.psi)=-20.7154,
    LogNormal(bdss.origin)=-2.0385,
    BirthDeathSerialSamplingModel/bdss(treeModel)=-Inf,
    DiscretizedBranchRates(discretizedBranchRates[branchRates])=-307.92
    Total = -Infinity
  ),
  CompoundLikelihood(compoundModel)=(
    TreeDataLikelihood(TreeDataLikelihood)=-23989.7613,
    TreeDataLikelihood(TreeDataLikelihood)=-12518.2699,
    TreeDataLikelihood(TreeDataLikelihood)=-85255.5142,
    TreeDataLikelihood(TreeDataLikelihood)=-18036.2998,
    TreeDataLikelihood(TreeDataLikelihood)=-11891.2902,
    TreeDataLikelihood(TreeDataLikelihood)=-10223.0584
    Total = -161914.19372079836
  )
  Total = -Infinity
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