The individual components of the posterior are as follows:
The initial posterior is zero:
CompoundLikelihood(compoundModel)=(
LogNormal(1stpos.kappa1)=-1.8654,
LogNormal(1stpos.kappa2)=-1.8654,
MultivariateDistributionLikelihood(dirichletDistribution)=1.7918,
Exponential(1stpos.alpha)=-0.3069,
Uniform(1stpos.pInv)=0.0,
LogNormal(2ndpos.kappa1)=-1.8654,
LogNormal(2ndpos.kappa2)=-1.8654,
MultivariateDistributionLikelihood(dirichletDistribution)=1.7918,
Uniform(2ndpos.pInv)=0.0,
MultivariateDistributionLikelihood(dirichletDistribution)=-5.9631,
MultivariateDistributionLikelihood(dirichletDistribution)=1.7918,
Exponential(3rdpos.alpha)=-0.3069,
Uniform(3rdpos.pInv)=0.0,
LogNormal(rRNA.kappa1)=-1.8654,
LogNormal(rRNA.kappa2)=-1.8654,
MultivariateDistributionLikelihood(dirichletDistribution)=1.7918,
Exponential(rRNA.alpha)=-0.3069,
Uniform(rRNA.pInv)=0.0,
LogNormal(dloop.kappa)=-1.8654,
MultivariateDistributionLikelihood(dirichletDistribution)=1.7918,
Exponential(dloop.alpha)=-0.3069,
Uniform(dloop.pInv)=0.0,
LogNormal(tRNA.kappa)=-1.8654,
MultivariateDistributionLikelihood(dirichletDistribution)=1.7918,
Uniform(tRNA.pInv)=0.0,
MultivariateDistributionLikelihood(dirichletDistribution)=4.7875,
CTMCScalePrior(ctmcScalePrior)=-43097.115,
Exponential(ucld.stdev)=0.0986,
LogNormal(bdss.birthRate)=-2.0385,
Uniform(bdss.relativeDeathRate)=0.0,
LogNormal(bdss.psi)=-20.7154,
LogNormal(bdss.origin)=-2.0385,
BirthDeathSerialSamplingModel/bdss(treeModel)=-Inf,
DiscretizedBranchRates(discretizedBranchRates[branchRates])=-307.92
Total = -Infinity
),
CompoundLikelihood(compoundModel)=(
TreeDataLikelihood(TreeDataLikelihood)=-23989.7613,
TreeDataLikelihood(TreeDataLikelihood)=-12518.2699,
TreeDataLikelihood(TreeDataLikelihood)=-85255.5142,
TreeDataLikelihood(TreeDataLikelihood)=-18036.2998,
TreeDataLikelihood(TreeDataLikelihood)=-11891.2902,
TreeDataLikelihood(TreeDataLikelihood)=-10223.0584
Total = -161914.
19372079836 )
Total = -Infinity
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