the BEAGLE bug of the BEAST (v.1.10.0)!

Artem B

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Jul 4, 2018, 11:18:00 PM7/4/18

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Good afternoon! New version of the BEAST has the issue. Before starting the BEAST I take off the BEAGLE check-box (I haven't the BEAGLE library) but the program try to run the BEAGLE anyway and can't find it! Consequently it doesn't work at all! :(

Kai He

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Jul 4, 2018, 11:26:40 PM7/4/18

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Hi Artem,

Why not install BEAGLE? May also need Java SE Developmental Kit.

Best,

Kai

------------------------------------------
##this is from a previous discussion###

I am running Windows 8.1, and even though I had JRE7 installed, I took Gehara's advice and downloaded Java SE Developmental Kit 7 and BEAGLE now works with BEAST:

http://www.oracle.com/technetwork/java/javase/downloads/jdk7-downloads-1880260.html

After many failed attempts of getting BEAGLE to work, despite correct loading of OpenCL and NVIDIA drivers, I now have a functional BEAST-BEAGLE test run:

##this is from a previous discussion###

------------------------------------------

Cheers,

Kai

Artem B

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Jul 5, 2018, 1:43:46 AM7/5/18

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Hi Kai! Thank you for your reply! I use Linux. I installed BEAGLE but I got an error:

"INFO:   BEAGLE function, create, returned error code -6 (No resource matches requirements)
Fatal exception: No acceptable BEAGLE library plugins found. Make sure that BEAGLE is properly installed or try changing resource requirements.
java.lang.RuntimeException: No acceptable BEAGLE library plugins found. Make sure that BEAGLE is properly installed or try changing resource requirements."

I installed all Java's that I know (jdk8, jre8, oracle) :(

Artem B

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Jul 5, 2018, 2:24:08 AM7/5/18

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Oh my... I did that. But I have to use terminal command "~/Desktop/Работа/BEASTv1.8.4/bin$ ./beast -beagle -beagle_SSE -threads 8 input.xml" to run the BEAST with BEAGLE. I don't understand why the BEAST doesn't see the java by running like a shell script.

Kai He

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Jul 5, 2018, 5:04:30 AM7/5/18

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It works for me under Ubuntu 16 (for both BEAST v1 and v2). I don't know what might be the problem, but "beast -beagle_info" may help to troubleshoot.

Good luck!

Kai

Guy Baele

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Jul 7, 2018, 3:26:31 AM7/7/18

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BEAST v1.10 will require BEAGLE to run for almost anything, so in the future BEAGLE will have to be installed if you want to use BEAST.

Guy

Op donderdag 5 juli 2018 05:18:00 UTC+2 schreef Artem B:

Artem B

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Jul 7, 2018, 1:55:46 PM7/7/18

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I got it! Thank you for your reply, Guy!

суббота, 7 июля 2018 г., 15:26:31 UTC+8 пользователь Guy Baele написал:

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