Help, fatal error occurs when using Beagle
792 views
Skip to first unread message
Marlon Machado
Aug 2, 2014, 11:39:36 AM8/2/14
to beast...@googlegroups.com
Hi all,
I am trying to run beast with beagle. I managed to successfully install beagle and make beast load it following the instructions given in other thread https://groups.google.com/forum/#!topic/beast-users/GdBaFiJq1QA
BEAGLE resources available:
0 : CPU
Flags: PRECISION_SINGLE PRECISION_DOUBLE COMPUTATION_SYNCH EIGEN_REAL EIGEN_COMPLEX SCALING_MANUAL SCALING_AUTO SCALING_ALWAYS SCALERS_RAW SCALERS_LOG VECTOR_SSE VECTOR_NONE THREADING_NONE PROCESSOR_CPU FRAMEWORK_CPU
But now I am getting a fatal error message, see below. I am using BEAST 2.1.3 and BEAGLE 2.1. Any ideas?
#
# A fatal error has been detected by the Java Runtime Environment:
#
# EXCEPTION_ACCESS_VIOLATION (0xc0000005) at pc=0x04a7cb8d, pid=2764, tid=1908
#
# JRE version: Java(TM) SE Runtime Environment (7.0_65-b20) (build 1.7.0_65-b20)
# Java VM: Java HotSpot(TM) Client VM (24.65-b04 mixed mode windows-x86 )
# Problematic frame:
# C [hmsbeagle-cpu-sse32-21.dll+0xcb8d]
#
# Failed to write core dump. Minidumps are not enabled by default on client versions of Windows
#
# If you would like to submit a bug report, please visit:
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
--------------- T H R E A D ---------------
Current thread (0x023cb800): JavaThread "main" [_thread_in_native, id=1908, stack(0x01b80000,0x01bd0000)]
siginfo: ExceptionCode=0xc0000005, reading address 0xffffffff
Registers:
EAX=0x00000080, EBX=0x01bcf2e0, ECX=0x00000000, EDX=0x06960d18
ESP=0x01bcf120, EBP=0x01bcf2d0, ESI=0x07b7f4a8, EDI=0x00000000
EIP=0x04a7cb8d, EFLAGS=0x00010246
Top of Stack: (sp=0x01bcf120)
0x01bcf120: 06960d18 06707190 01bcf184 ffffd7b0
0x01bcf130: 067be868 00000000 06707190 067bc138
0x01bcf140: ffffffff 3fefffff 00000000 00000000
0x01bcf150: 00000000 00000000 00000000 00000000
0x01bcf160: 00000000 00000000 00000000 3ff00000
0x01bcf170: 00000000 3cd00000 00000000 00000000
0x01bcf180: 00000000 3cd00000 00000000 3cd00000
0x01bcf190: 00000000 3ff00000 00000000 00000000
Instructions: (pc=0x04a7cb8d)
0x04a7cb6d: 00 00 00 8b 04 30 8b 0e c1 e0 05 c1 e1 05 66 0f
0x04a7cb7d: 28 84 05 30 ff ff ff 66 0f 59 84 0d 70 fe ff ff
0x04a7cb8d: 66 0f 29 02 66 0f 28 84 05 40 ff ff ff 66 0f 59
0x04a7cb9d: 84 0d 80 fe ff ff 8b 85 68 fe ff ff 66 0f 29 42
Register to memory mapping:
EAX=0x00000080 is an unknown value
EBX=0x01bcf2e0 is pointing into the stack for thread: 0x023cb800
ECX=0x00000000 is an unknown value
EDX=0x06960d18 is an unknown value
ESP=0x01bcf120 is pointing into the stack for thread: 0x023cb800
EBP=0x01bcf2d0 is pointing into the stack for thread: 0x023cb800
ESI=0x07b7f4a8 is an unknown value
EDI=0x00000000 is an unknown value
Stack: [0x01b80000,0x01bd0000], sp=0x01bcf120, free space=316k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
C [hmsbeagle-cpu-sse32-21.dll+0xcb8d]
C [hmsbeagle-cpu-sse32-21.dll+0x114d9]
C [hmsbeagle-jni.dll+0x693e]
C [hmsbeagle-jni.dll+0x7679]
j beagle.BeagleJNIWrapper.updatePartials(I[III)I+0
j beagle.BeagleJNIImpl.updatePartials([III)V+10
j beast.evolution.likelihood.BeagleTreeLikelihood.calculateLogP()D+447
j beast.evolution.likelihood.TreeLikelihood.calculateLogP()D+12
j beast.core.util.CompoundDistribution.calculateLogP()D+83
j beast.core.util.CompoundDistribution.calculateLogP()D+83
j beast.core.State.robustlyCalcPosterior(Lbeast/core/Distribution;)D+15
j beast.core.MCMC.run()V+184
j beast.app.BeastMCMC.run()V+13
j beast.app.beastapp.BeastMain.<init>(Lbeast/app/BeastMCMC;Lbeast/app/beastapp/BeastMain$BeastConsoleApp;I)V+88
j beast.app.beastapp.BeastMain.main([Ljava/lang/String;)V+1956
v ~StubRoutines::call_stub
V [jvm.dll+0x1410fa]
V [jvm.dll+0x20567e]
V [jvm.dll+0x14117d]
V [jvm.dll+0xca7f5]
V [jvm.dll+0xd5497]
C [javaw.exe+0x2070]
C [javaw.exe+0xa601]
C [javaw.exe+0xa68b]
C [kernel32.dll+0x4d3c9]
C [ntdll.dll+0x41603]
C [ntdll.dll+0x415d6]
Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
j beagle.BeagleJNIWrapper.updatePartials(I[III)I+0
j beagle.BeagleJNIImpl.updatePartials([III)V+10
j beast.evolution.likelihood.BeagleTreeLikelihood.calculateLogP()D+447
j beast.evolution.likelihood.TreeLikelihood.calculateLogP()D+12
j beast.core.util.CompoundDistribution.calculateLogP()D+83
j beast.core.util.CompoundDistribution.calculateLogP()D+83
j beast.core.State.robustlyCalcPosterior(Lbeast/core/Distribution;)D+15
j beast.core.MCMC.run()V+184
j beast.app.BeastMCMC.run()V+13
j beast.app.beastapp.BeastMain.<init>(Lbeast/app/BeastMCMC;Lbeast/app/beastapp/BeastMain$BeastConsoleApp;I)V+88
j beast.app.beastapp.BeastMain.main([Ljava/lang/String;)V+1956
v ~StubRoutines::call_stub
--------------- P R O C E S S ---------------
Java Threads: ( => current thread )
0x05803000 JavaThread "Swing-Shell" daemon [_thread_blocked, id=3244, stack(0x06060000,0x060b0000)]
0x058f6400 JavaThread "TimerQueue" daemon [_thread_blocked, id=2528, stack(0x049d0000,0x04a20000)]
0x058ce000 JavaThread "Thread-3" [_thread_blocked, id=3420, stack(0x055f0000,0x05640000)]
0x058c9c00 JavaThread "Thread-2" [_thread_blocked, id=2704, stack(0x05640000,0x05690000)]
0x057d0400 JavaThread "AWT-EventQueue-0" [_thread_blocked, id=1488, stack(0x00830000,0x00880000)]
0x048e5400 JavaThread "AWT-Windows" daemon [_thread_in_native, id=3768, stack(0x04e70000,0x04ec0000)]
0x048e4800 JavaThread "AWT-Shutdown" [_thread_blocked, id=1336, stack(0x04da0000,0x04df0000)]
0x048e2000 JavaThread "Java2D Disposer" daemon [_thread_blocked, id=2468, stack(0x04d10000,0x04d60000)]
0x04812c00 JavaThread "Service Thread" daemon [_thread_blocked, id=3932, stack(0x02460000,0x024b0000)]
0x04808400 JavaThread "C1 CompilerThread0" daemon [_thread_blocked, id=4084, stack(0x04b20000,0x04b70000)]
0x04807400 JavaThread "Attach Listener" daemon [_thread_blocked, id=4064, stack(0x04ad0000,0x04b20000)]
0x04804000 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=4068, stack(0x01a90000,0x01ae0000)]
0x047d9c00 JavaThread "Finalizer" daemon [_thread_blocked, id=1932, stack(0x02370000,0x023c0000)]
0x047d4c00 JavaThread "Reference Handler" daemon [_thread_blocked, id=3484, stack(0x024f0000,0x02540000)]
=>0x023cb800 JavaThread "main" [_thread_in_native, id=1908, stack(0x01b80000,0x01bd0000)]
Other Threads:
0x047d2800 VMThread [stack: 0x023f0000,0x02440000] [id=3372]
0x0482dc00 WatcherThread [stack: 0x04a20000,0x04a70000] [id=3464]
VM state:not at safepoint (normal execution)
VM Mutex/Monitor currently owned by a thread: None
Heap
def new generation total 78656K, used 23906K [0x0e400000, 0x13950000, 0x23950000)
eden space 69952K, 30% used [0x0e400000, 0x0f92cca8, 0x12850000)
from space 8704K, 25% used [0x12850000, 0x12a7be08, 0x130d0000)
to space 8704K, 0% used [0x130d0000, 0x130d0000, 0x13950000)
tenured generation total 174784K, used 7328K [0x23950000, 0x2e400000, 0x4e400000)
the space 174784K, 4% used [0x23950000, 0x24078020, 0x24078200, 0x2e400000)
compacting perm gen total 12288K, used 11118K [0x4e400000, 0x4f000000, 0x52400000)
the space 12288K, 90% used [0x4e400000, 0x4eedb9f8, 0x4eedba00, 0x4f000000)
No shared spaces configured.
Card table byte_map: [0x045a0000,0x047d0000] byte_map_base: 0x0452e000
Polling page: 0x001c0000
Code Cache [0x025a0000, 0x02880000, 0x045a0000)
total_blobs=1586 nmethods=1341 adapters=181 free_code_cache=29824Kb largest_free_block=30539840
Compilation events (10 events):
Event: 31.373 Thread 0x04808400 nmethod 1343 0x0287de48 code [0x0287df70, 0x0287e1a4]
Event: 31.378 Thread 0x04808400 1344 ! org.apache.commons.math.distribution.AbstractContinuousDistribution$1::value (85 bytes)
Event: 31.378 Thread 0x04808400 nmethod 1344 0x0287e2c8 code [0x0287e430, 0x0287e86c]
Event: 31.378 Thread 0x04808400 1345 ! org.apache.commons.math.distribution.NormalDistributionImpl::cumulativeProbability (71 bytes)
Event: 31.378 Thread 0x04808400 nmethod 1345 0x0287ebc8 code [0x0287ed20, 0x0287eedc]
Event: 31.378 Thread 0x04808400 1346 org.apache.commons.math.special.Erf::erf (27 bytes)
Event: 31.379 Thread 0x04808400 nmethod 1346 0x0287ef88 code [0x0287f0a0, 0x0287f16c]
Event: 31.379 Thread 0x04808400 1347 java.lang.Math::max (45 bytes)
Event: 31.379 Thread 0x04808400 nmethod 1347 0x0287f1c8 code [0x0287f2c0, 0x0287f420]
Event: 31.379 Thread 0x04808400 1348 org.apache.commons.math.analysis.solvers.BrentSolver::solve (491 bytes)
GC Heap History (4 events):
Event: 23.486 GC heap before
{Heap before GC invocations=0 (full 0):
def new generation total 78656K, used 69952K [0x0e400000, 0x13950000, 0x23950000)
eden space 69952K, 100% used [0x0e400000, 0x12850000, 0x12850000)
from space 8704K, 0% used [0x12850000, 0x12850000, 0x130d0000)
to space 8704K, 0% used [0x130d0000, 0x130d0000, 0x13950000)
tenured generation total 174784K, used 0K [0x23950000, 0x2e400000, 0x4e400000)
the space 174784K, 0% used [0x23950000, 0x23950000, 0x23950200, 0x2e400000)
compacting perm gen total 12288K, used 10413K [0x4e400000, 0x4f000000, 0x52400000)
the space 12288K, 84% used [0x4e400000, 0x4ee2b578, 0x4ee2b600, 0x4f000000)
No shared spaces configured.
Event: 23.517 GC heap after
Heap after GC invocations=1 (full 0):
def new generation total 78656K, used 8109K [0x0e400000, 0x13950000, 0x23950000)
eden space 69952K, 0% used [0x0e400000, 0x0e400000, 0x12850000)
from space 8704K, 93% used [0x130d0000, 0x138bb5c0, 0x13950000)
to space 8704K, 0% used [0x12850000, 0x12850000, 0x130d0000)
tenured generation total 174784K, used 0K [0x23950000, 0x2e400000, 0x4e400000)
the space 174784K, 0% used [0x23950000, 0x23950000, 0x23950200, 0x2e400000)
compacting perm gen total 12288K, used 10413K [0x4e400000, 0x4f000000, 0x52400000)
the space 12288K, 84% used [0x4e400000, 0x4ee2b578, 0x4ee2b600, 0x4f000000)
No shared spaces configured.
}
Event: 29.231 GC heap before
{Heap before GC invocations=1 (full 0):
def new generation total 78656K, used 78061K [0x0e400000, 0x13950000, 0x23950000)
eden space 69952K, 100% used [0x0e400000, 0x12850000, 0x12850000)
from space 8704K, 93% used [0x130d0000, 0x138bb5c0, 0x13950000)
to space 8704K, 0% used [0x12850000, 0x12850000, 0x130d0000)
tenured generation total 174784K, used 0K [0x23950000, 0x2e400000, 0x4e400000)
the space 174784K, 0% used [0x23950000, 0x23950000, 0x23950200, 0x2e400000)
compacting perm gen total 12288K, used 10919K [0x4e400000, 0x4f000000, 0x52400000)
the space 12288K, 88% used [0x4e400000, 0x4eea9d40, 0x4eea9e00, 0x4f000000)
No shared spaces configured.
Event: 29.259 GC heap after
Heap after GC invocations=2 (full 0):
def new generation total 78656K, used 2223K [0x0e400000, 0x13950000, 0x23950000)
eden space 69952K, 0% used [0x0e400000, 0x0e400000, 0x12850000)
from space 8704K, 25% used [0x12850000, 0x12a7be08, 0x130d0000)
to space 8704K, 0% used [0x130d0000, 0x130d0000, 0x13950000)
tenured generation total 174784K, used 7328K [0x23950000, 0x2e400000, 0x4e400000)
the space 174784K, 4% used [0x23950000, 0x24078020, 0x24078200, 0x2e400000)
compacting perm gen total 12288K, used 10919K [0x4e400000, 0x4f000000, 0x52400000)
the space 12288K, 88% used [0x4e400000, 0x4eea9d40, 0x4eea9e00, 0x4f000000)
No shared spaces configured.
}
Deoptimization events (0 events):
No events
Internal exceptions (10 events):
Event: 29.181 Thread 0x023cb800 Threw 0x11b21cc0 at C:\re\jdk7u65\1320\hotspot\src\share\vm\prims\jvm.cpp:1244
Event: 30.324 Thread 0x023cb800 Threw 0x0f67d0d8 at C:\re\jdk7u65\1320\hotspot\src\share\vm\prims\jvm.cpp:1244
Event: 30.325 Thread 0x023cb800 Threw 0x0f680738 at C:\re\jdk7u65\1320\hotspot\src\share\vm\prims\jvm.cpp:1244
Event: 30.326 Thread 0x023cb800 Threw 0x0f6848a0 at C:\re\jdk7u65\1320\hotspot\src\share\vm\prims\jvm.cpp:1244
Event: 31.346 Thread 0x023cb800 Threw 0x0f796420 at C:\re\jdk7u65\1320\hotspot\src\share\vm\prims\jvm.cpp:1244
Event: 31.366 Thread 0x023cb800 Threw 0x0f856df8 at C:\re\jdk7u65\1320\hotspot\src\share\vm\prims\jvm.cpp:1244
Event: 31.366 Thread 0x023cb800 Threw 0x0f8577d8 at C:\re\jdk7u65\1320\hotspot\src\share\vm\prims\jvm.cpp:1244
Event: 31.369 Thread 0x023cb800 Threw 0x0f889770 at C:\re\jdk7u65\1320\hotspot\src\share\vm\prims\jvm.cpp:1244
Event: 31.371 Thread 0x023cb800 Threw 0x0f88e0a0 at C:\re\jdk7u65\1320\hotspot\src\share\vm\prims\jvm.cpp:1244
Event: 31.371 Thread 0x023cb800 Threw 0x0f88fcf0 at C:\re\jdk7u65\1320\hotspot\src\share\vm\prims\jvm.cpp:1244
Events (10 events):
Event: 31.369 loading class 0x047e3270
Event: 31.369 loading class 0x047e3270 done
Event: 31.371 loading class 0x0090e9a8
Event: 31.371 loading class 0x0090e9a8 done
Event: 31.371 loading class 0x0090ef10
Event: 31.371 loading class 0x0090ef10 done
Event: 31.371 loading class 0x047d18f0
Event: 31.371 loading class 0x047d18f0 done
Event: 31.371 loading class 0x047e31e0
Event: 31.371 loading class 0x047e31e0 done
Dynamic libraries:
0x00a00000 - 0x00a2f000 C:\Program Files\Java\jre7\bin\javaw.exe
0x772e0000 - 0x77408000 C:\Windows\system32\ntdll.dll
0x759a0000 - 0x75a7d000 C:\Windows\system32\kernel32.dll
0x75be0000 - 0x75ca6000 C:\Windows\system32\ADVAPI32.dll
0x75b10000 - 0x75bd2000 C:\Windows\system32\RPCRT4.dll
0x763a0000 - 0x7643d000 C:\Windows\system32\USER32.dll
0x761d0000 - 0x7621c000 C:\Windows\system32\GDI32.dll
0x748c0000 - 0x74a5e000 C:\Windows\WinSxS\x86_microsoft.windows.common-controls_6595b64144ccf1df_6.0.6002.18305_none_5cb72f2a088b0ed3\COMCTL32.dll
0x76550000 - 0x765fa000 C:\Windows\system32\msvcrt.dll
0x76000000 - 0x76059000 C:\Windows\system32\SHLWAPI.dll
0x76060000 - 0x7607e000 C:\Windows\system32\IMM32.DLL
0x76250000 - 0x76318000 C:\Windows\system32\MSCTF.dll
0x75e60000 - 0x75e69000 C:\Windows\system32\LPK.DLL
0x76440000 - 0x764bd000 C:\Windows\system32\USP10.dll
0x6e1e0000 - 0x6e29f000 C:\Program Files\Java\jre7\bin\msvcr100.dll
0x66c30000 - 0x66fb8000 C:\Program Files\Java\jre7\bin\client\jvm.dll
0x71d90000 - 0x71d97000 C:\Windows\system32\WSOCK32.dll
0x76220000 - 0x7624d000 C:\Windows\system32\WS2_32.dll
0x75d00000 - 0x75d06000 C:\Windows\system32\NSI.dll
0x731e0000 - 0x73212000 C:\Windows\system32\WINMM.dll
0x76080000 - 0x761c5000 C:\Windows\system32\ole32.dll
0x764c0000 - 0x7654d000 C:\Windows\system32\OLEAUT32.dll
0x74c00000 - 0x74c3e000 C:\Windows\system32\OLEACC.dll
0x75900000 - 0x75907000 C:\Windows\system32\PSAPI.DLL
0x70810000 - 0x7081c000 C:\Program Files\Java\jre7\bin\verify.dll
0x70780000 - 0x707a0000 C:\Program Files\Java\jre7\bin\java.dll
0x6e400000 - 0x6e413000 C:\Program Files\Java\jre7\bin\zip.dll
0x69e40000 - 0x69f83000 C:\Program Files\Java\jre7\bin\awt.dll
0x73800000 - 0x7383f000 C:\Windows\system32\uxtheme.dll
0x76600000 - 0x77111000 C:\Windows\system32\SHELL32.dll
0x6fac0000 - 0x6facc000 C:\Windows\system32\DWMAPI.DLL
0x6e2e0000 - 0x6e319000 C:\Program Files\Java\jre7\bin\fontmanager.dll
0x75a80000 - 0x75b04000 C:\Windows\system32\CLBCatQ.DLL
0x71e60000 - 0x71f54000 C:\Windows\system32\WindowsCodecs.dll
0x757d0000 - 0x757fc000 C:\Windows\system32\apphelp.dll
0x6f470000 - 0x6f493000 C:\Users\Marlon\AppData\Roaming\Dropbox\bin\DropboxExt.24.dll
0x70c30000 - 0x70d0c000 C:\Windows\system32\dbghelp.dll
0x6ecf0000 - 0x6ed7e000 C:\Windows\WinSxS\x86_microsoft.vc90.crt_1fc8b3b9a1e18e3b_9.0.30729.6161_none_50934f2ebcb7eb57\MSVCP90.dll
0x71530000 - 0x715d3000 C:\Windows\WinSxS\x86_microsoft.vc90.crt_1fc8b3b9a1e18e3b_9.0.30729.6161_none_50934f2ebcb7eb57\MSVCR90.dll
0x6f4b0000 - 0x6f4cf000 C:\Windows\system32\EhStorShell.dll
0x73a30000 - 0x73aeb000 C:\Windows\system32\PROPSYS.dll
0x6e3e0000 - 0x6e3f4000 C:\Program Files\Java\jre7\bin\net.dll
0x74ff0000 - 0x7502b000 C:\Windows\system32\mswsock.dll
0x75050000 - 0x75055000 C:\Windows\System32\wship6.dll
0x707b0000 - 0x707bf000 C:\Program Files\Java\jre7\bin\nio.dll
0x6e2b0000 - 0x6e2e0000 C:\Program Files\Java\jre7\bin\t2k.dll
0x6e1b0000 - 0x6e1d4000 C:\Program Files\Java\jre7\bin\dcpr.dll
0x71d00000 - 0x71d85000 C:\Windows\WinSxS\x86_microsoft.windows.common-controls_6595b64144ccf1df_5.82.6002.18879_none_88f80d1769beeaec\comctl32.dll
0x75e70000 - 0x75ffa000 C:\Windows\system32\SETUPAPI.dll
0x66a00000 - 0x66c23000 C:\Windows\system32\NetworkExplorer.dll
0x6f4d0000 - 0x6f5da000 C:\Windows\System32\shdocvw.dll
0x75850000 - 0x7586e000 C:\Windows\system32\USERENV.dll
0x75830000 - 0x75844000 C:\Windows\system32\Secur32.dll
0x753d0000 - 0x753e4000 C:\Windows\system32\MPR.dll
0x6e320000 - 0x6e333000 C:\Windows\System32\ntlanman.dll
0x756a0000 - 0x75716000 C:\Windows\System32\NETAPI32.dll
0x707a0000 - 0x707a8000 C:\Windows\System32\drprov.dll
0x6e190000 - 0x6e1a2000 C:\Windows\System32\davclnt.dll
0x752d0000 - 0x753c5000 C:\Windows\System32\CRYPT32.dll
0x75430000 - 0x75442000 C:\Windows\System32\MSASN1.dll
0x70270000 - 0x7027b000 C:\Windows\system32\cscapi.dll
0x66790000 - 0x669fe000 C:\Windows\system32\wpdshext.dll
0x734a0000 - 0x7364b000 C:\Windows\WinSxS\x86_microsoft.windows.gdiplus_6595b64144ccf1df_1.0.6002.19096_none_9e59a14eca0fa8de\gdiplus.dll
0x70bd0000 - 0x70c26000 C:\Windows\system32\PortableDeviceApi.dll
0x74ab0000 - 0x74add000 C:\Windows\system32\WINTRUST.dll
0x75e30000 - 0x75e5a000 C:\Windows\system32\imagehlp.dll
0x6fa80000 - 0x6faab000 C:\Windows\system32\PortableDeviceTypes.dll
0x6e150000 - 0x6e18f000 C:\Windows\system32\audiodev.dll
0x6fb20000 - 0x6fd6b000 C:\Windows\system32\WMVCore.DLL
0x6fdb0000 - 0x6fde9000 C:\Windows\system32\WMASF.DLL
0x6d020000 - 0x6d040000 C:\Windows\System32\EhStorAPI.dll
0x6f630000 - 0x6f639000 C:\Windows\system32\LINKINFO.dll
0x01b40000 - 0x01b76000 C:\Program Files\Common Files\libhmsbeagle\hmsbeagle-jni.dll
0x024b0000 - 0x024ed000 C:\Program Files\Common Files\libhmsbeagle\hmsbeagle-cpu32-21.dll
0x04a70000 - 0x04aac000 C:\Program Files\Common Files\libhmsbeagle\hmsbeagle-cpu-sse32-21.dll
VM Arguments:
jvm_args: -Xms256m -Xmx1024m
java_command: beast.app.beastapp.BeastMain -window -working -options
Launcher Type: SUN_STANDARD
Environment Variables:
PATH=C:\Program Files\Common Files\libhmsbeagle\;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Program Files\MySQL\MySQL Server 5.1\bin;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Program Files\Java\jre7\bin
USERNAME=Marlon
OS=Windows_NT
PROCESSOR_IDENTIFIER=x86 Family 6 Model 23 Stepping 10, GenuineIntel
--------------- S Y S T E M ---------------
OS: Windows Vista Build 6002 Service Pack 2
CPU:total 2 (2 cores per cpu, 1 threads per core) family 6 model 23 stepping 10, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3, sse4.1, tsc
Memory: 4k page, physical 2085328k(1029528k free), swap 4427700k(3041652k free)
vm_info: Java HotSpot(TM) Client VM (24.65-b04) for windows-x86 JRE (1.7.0_65-b20), built on Jul 11 2014 01:01:06 by "java_re" with unknown MS VC++:1600
time: Sat Aug 02 11:41:17 2014
elapsed time: 31 seconds
Remco Bouckaert
Aug 2, 2014, 4:27:57 PM8/2/14
to beast...@googlegroups.com
Hi Marlon,
Perhaps you should uninstall CUDA?
https://groups.google.com/forum/#!searchin/beast-users/beagle$20uninstall$20cuda/beast-users/pXRJU7PLTFY/5ufbg-VzbOwJ
Remco
Perhaps you should uninstall CUDA?
https://groups.google.com/forum/#!searchin/beast-users/beagle$20uninstall$20cuda/beast-users/pXRJU7PLTFY/5ufbg-VzbOwJ
Remco
Gerardo Hernández
Aug 19, 2014, 12:27:02 AM8/19/14
to beast...@googlegroups.com
Hi Marlon,
I'm getting exactly the same error when trying to run an analysis using BEAGLE. This happened after I renamed the "hmsbeagle32.dll" file to "hmsbeagle-jni.dll" as suggested by Andrew in the link you mention below. I did so in order for my pc (windows 8, core i7 + Nvidia card, java runtime 7) to find the beagle library, which now is the case, but unable to use the resources. Below is the begining of the error message; it says the problematic frame is "C [hmsbeagle-cpu-sse32-21.DLL+0xcb8d]". I wonder if this is related to uninstalling CUDA as suggested by Remco? I'll check it out, hopefully someone can provide more clues to solve the problem.
Best regards,
Gerardo
# A fatal error has been detected by the Java Runtime Environment:
#
# EXCEPTION_ACCESS_VIOLATION (0xc0000005) at pc=0x4d4acb8d, pid=3832, tid=4824
#
# JRE version: Java(TM) SE Runtime Environment (7.0_67-b01) (build 1.7.0_67-b01)
# Java VM: Java HotSpot(TM) Client VM (24.65-b04 mixed mode windows-x86 )
# Problematic frame:
# C [hmsbeagle-cpu-sse32-21.DLL+0xcb8d]
#
# Failed to write core dump. Minidumps are not enabled by default on client versions of Windows
#
# If you would like to submit a bug report, please visit:
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
Gerardo Hernández
Aug 21, 2014, 6:54:34 PM8/21/14
to beast...@googlegroups.com
Hi Marlon,
El sábado, 2 de agosto de 2014 10:39:36 UTC-5, Marlon Machado escribió:
It seems to be an issue with the version of Java; I solved the problem by uninstalling the 32-bit version of JRE7 and installed the 64-bit version (windows x64):
Then I deleted the copy of the file I had renamed "hmsbeagle-jni.dll" and left the original file "hmsbeagle32.dll"; in other words. leave the BEAGLE files just as they come from the download. Restart your computer and hopefully, voilá! It worked for me, the speed of processing has increased about 5 times.
Regards,
Gerardo
El sábado, 2 de agosto de 2014 10:39:36 UTC-5, Marlon Machado escribió:
Reply all
Reply to author
Forward
0 new messages