beast-users

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May 16

How do operators specifically propose a new state for continuous parameters?

Hello, everyone! Recently, I have gotten stuck with some points of BEAST work algorithm. I will try

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How do operators specifically propose a new state for continuous parameters?

Hello, everyone! Recently, I have gotten stuck with some points of BEAST work algorithm. I will try

May 16

Ophélie Lebrasseur

May 15

Issue when selecting Birth Death Model prior and tip dates

Hello all, I would like to conduct a BETS analyse using Nested Sampling on a dataset with tip dates

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Issue when selecting Birth Death Model prior and tip dates

Hello all, I would like to conduct a BETS analyse using Nested Sampling on a dataset with tip dates

May 15

Manuel Iturriaga, Pavel Rinkman2

May 13

Some problem with Beast2

Could you provide a link to your xml-file? I figure that you have non-standard symbols inside but it

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Some problem with Beast2

Could you provide a link to your xml-file? I figure that you have non-standard symbols inside but it

May 13

ithi...@hotmail.com

May 13

Hi, what kind of fp64 ist beast/beast2 using. It looks like that GPUs fp64 capability is devided in

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Hi, what kind of fp64 ist beast/beast2 using. It looks like that GPUs fp64 capability is devided in

May 13

May 13

*beast age estimates are 0 at all nodes

Hi all, I have been using *beast to estimate a species tree and divergence times for a group of 38

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*beast age estimates are 0 at all nodes

Hi all, I have been using *beast to estimate a species tree and divergence times for a group of 38

May 13

May 12

Is there any way to execute nested sampling with the first BEAST?

Hello, everyone! I have to use the first BEAST because there is no a necessary for me model on the

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Is there any way to execute nested sampling with the first BEAST?

Hello, everyone! I have to use the first BEAST because there is no a necessary for me model on the

May 12

May 11

Cannot use continuous phylogeography on a plain

Hello, everyone! I would like to use continuous phylogeography from the first **BEAST** through **

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Cannot use continuous phylogeography on a plain

Hello, everyone! I would like to use continuous phylogeography from the first **BEAST** through **

May 11

May 11

End-tag error in BEAST-Phylonco

Hi, I run the example file (test_GT16_error.xml) in Phylonco. An error of ":154:5: The element

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End-tag error in BEAST-Phylonco

Hi, I run the example file (test_GT16_error.xml) in Phylonco. An error of ":154:5: The element

May 11

Nichelle Van Tassel

May 10

Failure to add SNAPP package

Hi! I am trying to install BEAST to my directory on an HPC, and I get the following error once I try

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Failure to add SNAPP package

Hi! I am trying to install BEAST to my directory on an HPC, and I get the following error once I try

May 10

beli...@gmx.de, jj biodiversity2

May 10

Which model for indels in BEAST?

Hello Belinda, Did you get the solutions for your questions? I'm also having similar indel model

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Which model for indels in BEAST?

Hello Belinda, Did you get the solutions for your questions? I'm also having similar indel model

May 10

Pavel Rinkman, Remco Bouckaert3

May 10

Problems with Bactrian scheduler java.lang.RuntimeException: Input 102: type mismatch for input parameter

Thank you very much! вторник, 10 мая 2022 г. в 04:04:53 UTC+3, higg...@gmail.com: Hi Pavel,

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Problems with Bactrian scheduler java.lang.RuntimeException: Input 102: type mismatch for input parameter

Thank you very much! вторник, 10 мая 2022 г. в 04:04:53 UTC+3, higg...@gmail.com: Hi Pavel,

May 10

Ching Ching WEE, Remco Bouckaert2

May 9

Substitution model selection in BEAST

One way to achieve this in BEAST 2.6.7 is to install the OBAMA package (https://github.com/rbouckaert

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Substitution model selection in BEAST

One way to achieve this in BEAST 2.6.7 is to install the OBAMA package (https://github.com/rbouckaert

May 9

Javier, Remco Bouckaert3

May 5

Error 1017 parsing the xml input file

Hello. I got through this error by loading the MODEL_SELECTION and SNAPP packages before calling

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Error 1017 parsing the xml input file

Hello. I got through this error by loading the MODEL_SELECTION and SNAPP packages before calling

May 5

Stephania Sandoval Arango, Jordan Douglas5

May 3

starbeast3 error parsing xml file

Hi Jordan, Thanks so much! I updated StarBeast3 and waited some days to reply because I wanted to see

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starbeast3 error parsing xml file

Hi Jordan, Thanks so much! I updated StarBeast3 and waited some days to reply because I wanted to see

May 3

May 3

Fatal error in running SNAPP after updating

Dear all, I'm using SNAPP in BEAST2. The xml are made using BEAUTi. There's no problem before

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Fatal error in running SNAPP after updating

Dear all, I'm using SNAPP in BEAST2. The xml are made using BEAUTi. There's no problem before

May 3

Ching Ching WEE

May 2

How to set sampling frequency of 1000 generation using BEASTv1.10.4

Dear BEAST Users I'm using BEASTv1.10.4. Below is the print screen of the software under the

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How to set sampling frequency of 1000 generation using BEASTv1.10.4

Dear BEAST Users I'm using BEASTv1.10.4. Below is the print screen of the software under the

May 2

Ching Ching WEE

May 2

Parameter setting in BEASTv2.6.7

Dear BEAST User I would like to use concatenated and aligned (MAFFT) amino acids sequences of protein

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Parameter setting in BEASTv2.6.7

Dear BEAST User I would like to use concatenated and aligned (MAFFT) amino acids sequences of protein

May 2

maryam almasi, Artem B2

May 2

monophyletic out groups in dating tree

Hello! Can you please provide the figure? Since a sister group is the same as an outgroup. Best

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monophyletic out groups in dating tree

Hello! Can you please provide the figure? Since a sister group is the same as an outgroup. Best

May 2

May 2

SRD06 slows the run

Hi there! In the recent version of BEAST (eg, 1.8.4) the SRD06 model has relatively good performance,

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SRD06 slows the run

Hi there! In the recent version of BEAST (eg, 1.8.4) the SRD06 model has relatively good performance,

May 2

Projet HDV, Artem B2

May 2

fixed evolution rate for a strict clock analysis.

hello! what's the version of beast you use? Best, Artem среда, 27 апреля 2022 г. в 02:22:24 UTC+8

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fixed evolution rate for a strict clock analysis.

hello! what's the version of beast you use? Best, Artem среда, 27 апреля 2022 г. в 02:22:24 UTC+8

May 2

EDG, … Pavel Rinkman3

May 1

Could you provide a link to your files? пятница, 29 апреля 2022 г. в 22:15:05 UTC+3, lorenz...@gmail.

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Could you provide a link to your files? пятница, 29 апреля 2022 г. в 22:15:05 UTC+3, lorenz...@gmail.

May 1

Santiago Sánchez, Jordan Douglas4

Apr 29

Divergence times with an average rate across genes

Hi Santiago, No worries :) By default, each gene will have its own clock rate and these clock rates

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Divergence times with an average rate across genes

Hi Santiago, No worries :) By default, each gene will have its own clock rate and these clock rates

Apr 29

Pavel Rinkman, Remco Bouckaert3

Apr 26

What is & how to solve File error: VP1_test.xml.state (Remote I/O error)?

Thank you very much! вторник, 26 апреля 2022 г. в 06:48:20 UTC+3, higg...@gmail.com: Hi Pavel, This

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What is & how to solve File error: VP1_test.xml.state (Remote I/O error)?

Thank you very much! вторник, 26 апреля 2022 г. в 06:48:20 UTC+3, higg...@gmail.com: Hi Pavel, This

Apr 26

Apr 22

Constructing EBSP with GBS SNPs (DArTseq)

Hi Beast users I've got DArTseq markers generated by GBS for 3 panmictic populations. DArTseq is

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Constructing EBSP with GBS SNPs (DArTseq)

Hi Beast users I've got DArTseq markers generated by GBS for 3 panmictic populations. DArTseq is

Apr 22

Kenji Yip Tong, Remco Bouckaert2

Apr 18

SNAPP Theta Prior for BFD

Hi Kenji, The prior distributions supported in BEAUti are indeed limited. One of the reasons is that

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SNAPP Theta Prior for BFD

Hi Kenji, The prior distributions supported in BEAUti are indeed limited. One of the reasons is that

Apr 18

Venkata Duvvuri

Apr 15

BEAGLE and BEAST1/BEAST2 and CPU and GPU specifications

Hello all, I am planning to setup a computer lab. And found some CPU and GPU specification

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BEAGLE and BEAST1/BEAST2 and CPU and GPU specifications

Hello all, I am planning to setup a computer lab. And found some CPU and GPU specification

Apr 15

Diana DIAZ C., … Jordan Douglas4

Apr 14

Strange branch lenght using strict clock and very low EES values using Relaxed clock

Hi Diana, There is a much more efficient version of the relaxed clock which should help with your

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Strange branch lenght using strict clock and very low EES values using Relaxed clock

Hi Diana, There is a much more efficient version of the relaxed clock which should help with your

Apr 14

Vaca, Lambodhar Damodaran2

Apr 14

If you use RAxML (and i think IQtree does this as well) you can feed your fasta/phy file and it will

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If you use RAxML (and i think IQtree does this as well) you can feed your fasta/phy file and it will

Apr 14

G K34, … Zeinolabedin Mohammadi4

Apr 12

Cannot select the Tree Speciation prior when using the STACEY template

Dear Graham, I have used and run the STACEY template implemented in BEAST 2.2.1 for species

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Cannot select the Tree Speciation prior when using the STACEY template

Dear Graham, I have used and run the STACEY template implemented in BEAST 2.2.1 for species

Apr 12

董鹏程, … Remco Bouckaert5

Apr 11

Some questions about divergence time estimation with large size SNPs dataset

Sorry for late reply higg, thank you for your advice, but here comes to a problem when I try to use

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Some questions about divergence time estimation with large size SNPs dataset

Sorry for late reply higg, thank you for your advice, but here comes to a problem when I try to use

Apr 11

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