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Pavel Rinkman
May 16
How do operators specifically propose a new state for continuous parameters?
Hello, everyone! Recently, I have gotten stuck with some points of BEAST work algorithm. I will try
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How do operators specifically propose a new state for continuous parameters?
Hello, everyone! Recently, I have gotten stuck with some points of BEAST work algorithm. I will try
May 16
Ophélie Lebrasseur
May 15
Issue when selecting Birth Death Model prior and tip dates
Hello all, I would like to conduct a BETS analyse using Nested Sampling on a dataset with tip dates
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Issue when selecting Birth Death Model prior and tip dates
Hello all, I would like to conduct a BETS analyse using Nested Sampling on a dataset with tip dates
May 15
Manuel Iturriaga
,
Pavel Rinkman
2
May 13
Some problem with Beast2
Could you provide a link to your xml-file? I figure that you have non-standard symbols inside but it
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Some problem with Beast2
Could you provide a link to your xml-file? I figure that you have non-standard symbols inside but it
May 13
ithi...@hotmail.com
May 13
Beast/Beast2
Hi, what kind of fp64 ist beast/beast2 using. It looks like that GPUs fp64 capability is devided in
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Beast/Beast2
Hi, what kind of fp64 ist beast/beast2 using. It looks like that GPUs fp64 capability is devided in
May 13
Laymon Ball
May 13
*beast age estimates are 0 at all nodes
Hi all, I have been using *beast to estimate a species tree and divergence times for a group of 38
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*beast age estimates are 0 at all nodes
Hi all, I have been using *beast to estimate a species tree and divergence times for a group of 38
May 13
Pavel Rinkman
May 12
Is there any way to execute nested sampling with the first BEAST?
Hello, everyone! I have to use the first BEAST because there is no a necessary for me model on the
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Is there any way to execute nested sampling with the first BEAST?
Hello, everyone! I have to use the first BEAST because there is no a necessary for me model on the
May 12
Pavel Rinkman
May 11
Cannot use continuous phylogeography on a plain
Hello, everyone! I would like to use continuous phylogeography from the first **BEAST** through **
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Cannot use continuous phylogeography on a plain
Hello, everyone! I would like to use continuous phylogeography from the first **BEAST** through **
May 11
Cathy
May 11
End-tag error in BEAST-Phylonco
Hi, I run the example file (test_GT16_error.xml) in Phylonco. An error of ":154:5: The element
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End-tag error in BEAST-Phylonco
Hi, I run the example file (test_GT16_error.xml) in Phylonco. An error of ":154:5: The element
May 11
Nichelle Van Tassel
May 10
Failure to add SNAPP package
Hi! I am trying to install BEAST to my directory on an HPC, and I get the following error once I try
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Failure to add SNAPP package
Hi! I am trying to install BEAST to my directory on an HPC, and I get the following error once I try
May 10
beli...@gmx.de
,
jj biodiversity
2
May 10
Which model for indels in BEAST?
Hello Belinda, Did you get the solutions for your questions? I'm also having similar indel model
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Which model for indels in BEAST?
Hello Belinda, Did you get the solutions for your questions? I'm also having similar indel model
May 10
Pavel Rinkman
,
Remco Bouckaert
3
May 10
Problems with Bactrian scheduler java.lang.RuntimeException: Input 102: type mismatch for input parameter
Thank you very much! вторник, 10 мая 2022 г. в 04:04:53 UTC+3, higg...@gmail.com: Hi Pavel,
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Problems with Bactrian scheduler java.lang.RuntimeException: Input 102: type mismatch for input parameter
Thank you very much! вторник, 10 мая 2022 г. в 04:04:53 UTC+3, higg...@gmail.com: Hi Pavel,
May 10
Ching Ching WEE
,
Remco Bouckaert
2
May 9
Substitution model selection in BEAST
One way to achieve this in BEAST 2.6.7 is to install the OBAMA package (https://github.com/rbouckaert
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Substitution model selection in BEAST
One way to achieve this in BEAST 2.6.7 is to install the OBAMA package (https://github.com/rbouckaert
May 9
Javier
,
Remco Bouckaert
3
May 5
Error 1017 parsing the xml input file
Hello. I got through this error by loading the MODEL_SELECTION and SNAPP packages before calling
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Error 1017 parsing the xml input file
Hello. I got through this error by loading the MODEL_SELECTION and SNAPP packages before calling
May 5
Stephania Sandoval Arango
,
Jordan Douglas
5
May 3
starbeast3 error parsing xml file
Hi Jordan, Thanks so much! I updated StarBeast3 and waited some days to reply because I wanted to see
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starbeast3 error parsing xml file
Hi Jordan, Thanks so much! I updated StarBeast3 and waited some days to reply because I wanted to see
May 3
林俊佑
May 3
Fatal error in running SNAPP after updating
Dear all, I'm using SNAPP in BEAST2. The xml are made using BEAUTi. There's no problem before
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Fatal error in running SNAPP after updating
Dear all, I'm using SNAPP in BEAST2. The xml are made using BEAUTi. There's no problem before
May 3
Ching Ching WEE
May 2
How to set sampling frequency of 1000 generation using BEASTv1.10.4
Dear BEAST Users I'm using BEASTv1.10.4. Below is the print screen of the software under the
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How to set sampling frequency of 1000 generation using BEASTv1.10.4
Dear BEAST Users I'm using BEASTv1.10.4. Below is the print screen of the software under the
May 2
Ching Ching WEE
May 2
Parameter setting in BEASTv2.6.7
Dear BEAST User I would like to use concatenated and aligned (MAFFT) amino acids sequences of protein
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Parameter setting in BEASTv2.6.7
Dear BEAST User I would like to use concatenated and aligned (MAFFT) amino acids sequences of protein
May 2
maryam almasi
,
Artem B
2
May 2
monophyletic out groups in dating tree
Hello! Can you please provide the figure? Since a sister group is the same as an outgroup. Best
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monophyletic out groups in dating tree
Hello! Can you please provide the figure? Since a sister group is the same as an outgroup. Best
May 2
Artem B
May 2
SRD06 slows the run
Hi there! In the recent version of BEAST (eg, 1.8.4) the SRD06 model has relatively good performance,
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SRD06 slows the run
Hi there! In the recent version of BEAST (eg, 1.8.4) the SRD06 model has relatively good performance,
May 2
Projet HDV
,
Artem B
2
May 2
fixed evolution rate for a strict clock analysis.
hello! what's the version of beast you use? Best, Artem среда, 27 апреля 2022 г. в 02:22:24 UTC+8
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fixed evolution rate for a strict clock analysis.
hello! what's the version of beast you use? Best, Artem среда, 27 апреля 2022 г. в 02:22:24 UTC+8
May 2
EDG
, …
Pavel Rinkman
3
May 1
Tracer
Could you provide a link to your files? пятница, 29 апреля 2022 г. в 22:15:05 UTC+3, lorenz...@gmail.
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Tracer
Could you provide a link to your files? пятница, 29 апреля 2022 г. в 22:15:05 UTC+3, lorenz...@gmail.
May 1
Santiago Sánchez
,
Jordan Douglas
4
Apr 29
Divergence times with an average rate across genes
Hi Santiago, No worries :) By default, each gene will have its own clock rate and these clock rates
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Divergence times with an average rate across genes
Hi Santiago, No worries :) By default, each gene will have its own clock rate and these clock rates
Apr 29
Pavel Rinkman
,
Remco Bouckaert
3
Apr 26
What is & how to solve File error: VP1_test.xml.state (Remote I/O error)?
Thank you very much! вторник, 26 апреля 2022 г. в 06:48:20 UTC+3, higg...@gmail.com: Hi Pavel, This
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What is & how to solve File error: VP1_test.xml.state (Remote I/O error)?
Thank you very much! вторник, 26 апреля 2022 г. в 06:48:20 UTC+3, higg...@gmail.com: Hi Pavel, This
Apr 26
Monica Fahey
Apr 22
Constructing EBSP with GBS SNPs (DArTseq)
Hi Beast users I've got DArTseq markers generated by GBS for 3 panmictic populations. DArTseq is
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Constructing EBSP with GBS SNPs (DArTseq)
Hi Beast users I've got DArTseq markers generated by GBS for 3 panmictic populations. DArTseq is
Apr 22
Kenji Yip Tong
,
Remco Bouckaert
2
Apr 18
SNAPP Theta Prior for BFD
Hi Kenji, The prior distributions supported in BEAUti are indeed limited. One of the reasons is that
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SNAPP Theta Prior for BFD
Hi Kenji, The prior distributions supported in BEAUti are indeed limited. One of the reasons is that
Apr 18
Venkata Duvvuri
Apr 15
BEAGLE and BEAST1/BEAST2 and CPU and GPU specifications
Hello all, I am planning to setup a computer lab. And found some CPU and GPU specification
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BEAGLE and BEAST1/BEAST2 and CPU and GPU specifications
Hello all, I am planning to setup a computer lab. And found some CPU and GPU specification
Apr 15
Diana DIAZ C.
, …
Jordan Douglas
4
Apr 14
Strange branch lenght using strict clock and very low EES values using Relaxed clock
Hi Diana, There is a much more efficient version of the relaxed clock which should help with your
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Strange branch lenght using strict clock and very low EES values using Relaxed clock
Hi Diana, There is a much more efficient version of the relaxed clock which should help with your
Apr 14
Vaca
,
Lambodhar Damodaran
2
Apr 14
downsampling
If you use RAxML (and i think IQtree does this as well) you can feed your fasta/phy file and it will
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downsampling
If you use RAxML (and i think IQtree does this as well) you can feed your fasta/phy file and it will
Apr 14
G K34
, …
Zeinolabedin Mohammadi
4
Apr 12
Cannot select the Tree Speciation prior when using the STACEY template
Dear Graham, I have used and run the STACEY template implemented in BEAST 2.2.1 for species
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Cannot select the Tree Speciation prior when using the STACEY template
Dear Graham, I have used and run the STACEY template implemented in BEAST 2.2.1 for species
Apr 12
董鹏程
, …
Remco Bouckaert
5
Apr 11
Some questions about divergence time estimation with large size SNPs dataset
Sorry for late reply higg, thank you for your advice, but here comes to a problem when I try to use
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Some questions about divergence time estimation with large size SNPs dataset
Sorry for late reply higg, thank you for your advice, but here comes to a problem when I try to use
Apr 11