Groups
Sign in
Groups
beast-users
Conversations
About
Send feedback
Help
beast-users
Contact owners and managers
1–30 of 6542
Mark all as read
Report group
0 selected
Dylan O'Hearn
Jul 1
ORC Priors
Hello, I'm performing a concatenated analysis of mtDNA and nuclear data and I'm partitioning
unread,
ORC Priors
Hello, I'm performing a concatenated analysis of mtDNA and nuclear data and I'm partitioning
Jul 1
Haley Arnold
,
michaelm
2
Jun 30
Inferring divergence time from SNP data in SNAPP?
Dear Haley, Perhaps this tutorial might be useful: https://github.com/ForBioPhylogenomics/tutorials/
unread,
Inferring divergence time from SNP data in SNAPP?
Dear Haley, Perhaps this tutorial might be useful: https://github.com/ForBioPhylogenomics/tutorials/
Jun 30
lncespe...@gmail.com
,
Monica Ó Fathaigh
3
Jun 29
very low ESS in SNAPPER runs (help!)
Hi Monica, Thank you so much for your thorough answer! I am already trying to figure out what is the
unread,
very low ESS in SNAPPER runs (help!)
Hi Monica, Thank you so much for your thorough answer! I am already trying to figure out what is the
Jun 29
CJ Battey
, …
Elizabeth Collins
20
Jun 28
error with BEAST2.2.0 SNAPP+MODEL_SELECTION
Hello Beast users, I am new to BEAST, and am attempting to run a BFD species delimitation analysis.
unread,
error with BEAST2.2.0 SNAPP+MODEL_SELECTION
Hello Beast users, I am new to BEAST, and am attempting to run a BFD species delimitation analysis.
Jun 28
Chucho Diaz-Cruz
,
higg...@gmail.com
3
Jun 27
drag and drop & run error
Indeed, that was the problem with my dataset. Thank you so much. El jueves, 27 de junio de 2024 a las
unread,
drag and drop & run error
Indeed, that was the problem with my dataset. Thank you so much. El jueves, 27 de junio de 2024 a las
Jun 27
Jaiane Oliveira
Jun 26
XML BEAUTI
Hi guys, I'm having trouble inserting these priors in the right place. How do I insert this data
unread,
XML BEAUTI
Hi guys, I'm having trouble inserting these priors in the right place. How do I insert this data
Jun 26
Wonseop Lim
, …
Artem B
7
Jun 25
Linearly increasing prior trace plot when using random local clock model
To get the only one clock rate prior you can try to select all partitions and then clicking 'link
unread,
Linearly increasing prior trace plot when using random local clock model
To get the only one clock rate prior you can try to select all partitions and then clicking 'link
Jun 25
magnus...@gmail.com
, …
Wonseop Lim
7
Jun 25
Ok to combine bmodeltest with nested sampling?
Hi Magnus, I know that this feed has not been active for a long time, but I am having some trouble
unread,
Ok to combine bmodeltest with nested sampling?
Hi Magnus, I know that this feed has not been active for a long time, but I am having some trouble
Jun 25
BLANCA MARÍA ROJAS ANDRÉS
2
Jun 25
Error with operator for birthDeath.sampleProbability
Hi again, I forgot to mention that I am using BEAST v1.10.4. Here is the xml file, just in case is
unread,
Error with operator for birthDeath.sampleProbability
Hi again, I forgot to mention that I am using BEAST v1.10.4. Here is the xml file, just in case is
Jun 25
Monica Ó Fathaigh
, …
Remco Bouckaert
7
Jun 24
Error - Coupled MCMC with Speedemon?
Thanks Monica, DensiTree should not be a seperate BEAST 2 package, it is just part of the
unread,
Error - Coupled MCMC with Speedemon?
Thanks Monica, DensiTree should not be a seperate BEAST 2 package, it is just part of the
Jun 24
Remco Bouckaert
Jun 24
BEAST v2.7.7 released
Dear BEAST user, We are pleased to announce the release of BEAST v2.7.7. The main changes are: o Add
unread,
BEAST v2.7.7 released
Dear BEAST user, We are pleased to announce the release of BEAST v2.7.7. The main changes are: o Add
Jun 24
Wonseop Lim
Jun 23
Availability of FLC packages on BEAST 2.7
Hi, I was trying to use an analysis using flexible local clock with BEAST 2.7.6, but couldn't
unread,
Availability of FLC packages on BEAST 2.7
Hi, I was trying to use an analysis using flexible local clock with BEAST 2.7.6, but couldn't
Jun 23
Yanina Briñoccoli
,
Gaspary Eugene
4
Jun 21
java.lang.RuntimeException: Cannot find taxon 1-78 in data
Thank you very much! The mistake was that there is no sequence "1-78" as such, but that the
unread,
java.lang.RuntimeException: Cannot find taxon 1-78 in data
Thank you very much! The mistake was that there is no sequence "1-78" as such, but that the
Jun 21
Jaiane Oliveira
, …
higg...@gmail.com
4
Jun 20
Treeannotator
With BEAST v2.7, java is included with the distribution, so TreeAnnotator should always have the
unread,
Treeannotator
With BEAST v2.7, java is included with the distribution, so TreeAnnotator should always have the
Jun 20
Fabricia
Jun 20
Spread3 command line
Hello, I am trying to sumarize the Bayes Factor using SPREAD3 using the command line but I get an
unread,
Spread3 command line
Hello, I am trying to sumarize the Bayes Factor using SPREAD3 using the command line but I get an
Jun 20
peterpan10
Jun 19
relaxed clock with thorney likelihood
Hello BEASTies, Anyone know how to implement a relaxed clock using a thorney likelihood? https://
unread,
relaxed clock with thorney likelihood
Hello BEASTies, Anyone know how to implement a relaxed clock using a thorney likelihood? https://
Jun 19
Jimmy A Mcguire
,
higg...@gmail.com
3
Jun 18
StarBeast3 multithreading
Hi Remco, Thanks so much for getting back to me! As it turns out, I figured out my mistake thanks to
unread,
StarBeast3 multithreading
Hi Remco, Thanks so much for getting back to me! As it turns out, I figured out my mistake thanks to
Jun 18
Avrajjal Ghosh
Jun 17
unable to run an xml file
Hello all, I am unable to run an xml file. Every time it throws up this error "validate and
unread,
unable to run an xml file
Hello all, I am unable to run an xml file. Every time it throws up this error "validate and
Jun 17
Matt Wersebe
Jun 17
Tracer SkyGrid Analysis Java Error
Hello, I working on estimating the the EPS history for a viral gene sequence using SkyGrid. I ran my
unread,
Tracer SkyGrid Analysis Java Error
Hello, I working on estimating the the EPS history for a viral gene sequence using SkyGrid. I ran my
Jun 17
xiwei zhang
Jun 14
Ask for help with spreaD3
We downloaded SpreaD3 and run examples in subsection4.1 'Visualizing an MCC tree annotated with
unread,
Ask for help with spreaD3
We downloaded SpreaD3 and run examples in subsection4.1 'Visualizing an MCC tree annotated with
Jun 14
Alex Byrne
Jun 14
Interrupted analyses on long runs with Beast v.1.10.4
Hi all, I've been running some long (3 weeks plus) analyses using Beast v.1.10.4 on a cluster in
unread,
Interrupted analyses on long runs with Beast v.1.10.4
Hi all, I've been running some long (3 weeks plus) analyses using Beast v.1.10.4 on a cluster in
Jun 14
lncespe...@gmail.com
,
higg...@gmail.com
3
Jun 13
How to optimize SNAPP run? Very slow runs even with multithreading
Hi Remco, Thank you so much! The snapper package was not really on my radar, thank you! I think is
unread,
How to optimize SNAPP run? Very slow runs even with multithreading
Hi Remco, Thank you so much! The snapper package was not really on my radar, thank you! I think is
Jun 13
Frasella De Martino
,
higg...@gmail.com
6
Jun 12
FixedTreeAnalysis with starting tree
Hi Frasella, The starting tree is not a binary tree: it has some nodes that only have a single child.
unread,
FixedTreeAnalysis with starting tree
Hi Frasella, The starting tree is not a binary tree: it has some nodes that only have a single child.
Jun 12
Asad Ali
, …
Gaspary Eugene
5
Jun 12
Treeannotator not going to 100%
Hi, I used BEAST2. But Remco already commented that this is due to some issue with the treeannotator
unread,
Treeannotator not going to 100%
Hi, I used BEAST2. But Remco already commented that this is due to some issue with the treeannotator
Jun 12
Sam Passmore
Jun 11
popSize posterior problems
Hi, I am trying to decipher why some parameters in my Bayesian Extended Skyline model are not
unread,
popSize posterior problems
Hi, I am trying to decipher why some parameters in my Bayesian Extended Skyline model are not
Jun 11
Emma Wang
, …
Gaspary Eugene
6
Jun 10
Question for TempEST
As part of this diagnosis you can also try to 1. Run treetime to drop out sequences that violate
unread,
Question for TempEST
As part of this diagnosis you can also try to 1. Run treetime to drop out sequences that violate
Jun 10
Issam Ismail
,
B Godwin
3
Jun 7
Beauti2 Unable to Load Nexus File
Honestly, I gave up on trying to use nexus files for Beauti2 and just started downloading the aligned
unread,
Beauti2 Unable to Load Nexus File
Honestly, I gave up on trying to use nexus files for Beauti2 and just started downloading the aligned
Jun 7
Bilal Muhammad
Jun 6
Writing MASCOT_constant results
Hi all I just wanted to know that when we use MASCOT-constant, migration rates come backwards in time
unread,
Writing MASCOT_constant results
Hi all I just wanted to know that when we use MASCOT-constant, migration rates come backwards in time
Jun 6
David Song
, …
B Godwin
3
Jun 6
Error importing nexus alignment to BEAUti
Did you resolve this error? I'm seeing a similar one and am stumped. On Sunday, March 24, 2024 at
unread,
Error importing nexus alignment to BEAUti
Did you resolve this error? I'm seeing a similar one and am stumped. On Sunday, March 24, 2024 at
Jun 6
Jaiane Oliveira
, …
Pedro Augusto Freire de Sá Pontes
7
Jun 3
Calibration
Sure! But I recommend you to use BEAST2. https://www.beast2.org/2020/12/15/ORC.html Em seg., 3 de jun
unread,
Calibration
Sure! But I recommend you to use BEAST2. https://www.beast2.org/2020/12/15/ORC.html Em seg., 3 de jun
Jun 3