beast-users

Dear Tim I want to know how to resume the analyze in Beast2,Could you sent me the relation the

Applications are now closed. We have a few places left so late applications will be considered on a

This is the final call for Taming the BEAST in the South Pacific, a 5-day summer short course on

Hi everyone, I am running a nucleotide dataset of the influenza HA gene with ~1300 sequences, 4

Hi Daniel, Personally, I don't think that offsets (or minimums or maximums) are appropriate in

Dear all, I'm working on a time-calibrated phylogenetic analysis using BEAST, and I'd

Dear Shoaib, Yes BEAST 2 and BEAST X both support amino acids, using substitution models like

Dear BEAST Team, I am currently working on phylogenetic analysis using protein (amino acid) sequences

Hi everyone, My beast always shuts down while it works. This phenomenon only occurred when I

Thanks for fruitful replies. i have one more doubt as i am running beast to know TMRCA for 5

Hey Mateusz, As I remember, SkyGrid has improper priors which do not integrate to 1, so the error can

OK, just make sure to check that the tip dates in the trees that are sampled are correct. Remco On

Hi! I am new to BEAST, and I will be conducting numerous experiments and replicates; therefore, I

Dear Remco, Thank you for clarifying. I was interested in the latter - in that case I'll stick to

Dear colleagues, I'm encountering an error in BEAUti v10.5.0 when trying to generate an XML file

Hi everyone, I am trying to make a beast tree using an ML result. I use the Starting tree panel and

Hello, I'm analyzing a small wildlife population (7 individuals all collected from within a few

Hello, When using phased haplotypes (ie, the two haplotypes of a nuclear locus in a diploid

Hi Malithi, You force R2 to 1 by dating tips in BEAST, which, as far as I understand, fits distances

Hi all, I'm building a BEAST2 analysis using linguistic data (binary character matrix) and tip-

Hi, Does anyone have any literature recommendation for the mutation-death model in beauti? I would

Hi all, I'm working with a Skygrid coalescent model and have some questions about the Ne

Dear group members, I have run several independent MCMC runs in the BEAST to check for the

Dear group members, I ran several independent MCC runs in the BEAST to check for the convergence

Greetings, I'm running a BEAST dating analysis with 197 taxa and 100 loci in 16 partitions. The

Thanks for taking the trouble to explain things, Bengt. OK, we agree about, and have the same

Hi Bruno, The traces of ucldMean and sigma should be checked in the first place. It would be good to

Dear BEAST users, I'm carrying out a dated phylogenetic analysis with SNAPPER. I installed BEAST

Had same issue. Downloading the package and extracting in a folder with same name in ~/.beast/2.7/

Hi Dan. Wow, that's a very big alignment file. So far, based on previous posts here, that command

Hi Jyotishko, Checking the MCMC traces of the rates makes sense. Can you provide a screenshot? Cheers

Hi everyone, I'm trying to run BFD* for species delimitation under scenarios of one, two, three,

Sorry I'm not sure I understand what you mean. Have you managed to identify what id would be need