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brettdw...@googlemail.com
1:25 PM
More secondary calibrations worthwhile
I am currently using several secondary calibration points from a study, but could greatly increase
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More secondary calibrations worthwhile
I am currently using several secondary calibration points from a study, but could greatly increase
1:25 PM
David Lohman
, …
ithi...@hotmail.com
5
1:25 PM
GPU specifications
Maybe a late response but AMD Cards like Radeon VII is quite fast aswell as Radeon PRO VII, is ECC
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GPU specifications
Maybe a late response but AMD Cards like Radeon VII is quite fast aswell as Radeon PRO VII, is ECC
1:25 PM
Emma Kopp
,
Jordan Douglas
3
1:25 PM
FDB with Optimized Relaxed Clock
hello, indeed i was using 2.6.6. Thank you Le dimanche 19 mars 2023 à 20:53:25 UTC+1, Jordan Douglas
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FDB with Optimized Relaxed Clock
hello, indeed i was using 2.6.6. Thank you Le dimanche 19 mars 2023 à 20:53:25 UTC+1, Jordan Douglas
1:25 PM
Kevin I. Sánchez
, …
Remco Bouckaert
5
Mar 21
Speedemon. Likelihood incorrectly calculated
Dear Remco I verified that the new version works with multithreading using a matrix that includes
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Speedemon. Likelihood incorrectly calculated
Dear Remco I verified that the new version works with multithreading using a matrix that includes
Mar 21
Ki828 J
,
Remco Bouckaert
2
Mar 20
Path sampling with GUI
Hi Nick, Thanks for pointing this out — I put in a fix which should be available by updating the
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Path sampling with GUI
Hi Nick, Thanks for pointing this out — I put in a fix which should be available by updating the
Mar 20
thijs...@gmail.com
,
Jordan Douglas
3
Mar 20
starbeast with single locus
Hi Jordan, Thanks a lot for your reply. Indeed I did notice already that the automatic set clock rate
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starbeast with single locus
Hi Jordan, Thanks a lot for your reply. Indeed I did notice already that the automatic set clock rate
Mar 20
nate...@gmail.com
Mar 19
Could multiple runs from EBSP combined in LogCombiner generate a bias in the results? (BEAST 2.X) Strange results
Dear Beast users I run 3 different EBSP analyses in BEAST 2.7. I combined the log files in
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Could multiple runs from EBSP combined in LogCombiner generate a bias in the results? (BEAST 2.X) Strange results
Dear Beast users I run 3 different EBSP analyses in BEAST 2.7. I combined the log files in
Mar 19
fati ezahedi
Mar 16
ESS are not going up
I have a data set of 344 SARS-CoV-2 sequences, and as a tree prior I'm using coalescent bayesian
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ESS are not going up
I have a data set of 344 SARS-CoV-2 sequences, and as a tree prior I'm using coalescent bayesian
Mar 16
Martin Stervander
, …
Kevin I. Sánchez
6
Mar 16
Snapper: (1) crashes if -threads >1; (2) operator missing for CoalenscentRate.t
Same problem here regarding multithreading when running speedemon for species delimitation with SNP
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Snapper: (1) crashes if -threads >1; (2) operator missing for CoalenscentRate.t
Same problem here regarding multithreading when running speedemon for species delimitation with SNP
Mar 16
David Maddison
, …
Alexei Drummond
5
Mar 16
Help with dating analysis.
Thank you so much, Alexei! This is great. I look forward to hearing more! Best wishes, David On Wed,
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Help with dating analysis.
Thank you so much, Alexei! This is great. I look forward to hearing more! Best wishes, David On Wed,
Mar 16
CJ Battey
, …
Nichelle Van Tassel
19
Mar 13
error with BEAST2.2.0 SNAPP+MODEL_SELECTION
Hi all, I was able to fix my errors by applying the solutions below: You can see the exact errors I
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error with BEAST2.2.0 SNAPP+MODEL_SELECTION
Hi all, I was able to fix my errors by applying the solutions below: You can see the exact errors I
Mar 13
Nichelle Van Tassel
3
Mar 13
JNI Error with SNAPP+MODEL_SELECTION on cluster
Update again: The problem seems to stem from java -cp "/path/beast/lib/launcher.jar" beast.
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JNI Error with SNAPP+MODEL_SELECTION on cluster
Update again: The problem seems to stem from java -cp "/path/beast/lib/launcher.jar" beast.
Mar 13
Georgelawson0425
Mar 13
NO TIME
HELLO
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NO TIME
HELLO
Mar 13
Dylan O'Hearn
Mar 12
Number of individuals in Starbeast / mtDNA vs nDNA
Hello, I have a question about how many sequences per species must be included for valid inferences
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Number of individuals in Starbeast / mtDNA vs nDNA
Hello, I have a question about how many sequences per species must be included for valid inferences
Mar 12
mountainmanjared
,
ruopeng xie
2
Mar 8
Trimming Outgroup for Bayesian Phylogeography Analysis
I have the same question. Does anyone know how to do it? Many thanks! Ruopeng 在2016年6月22日星期三 UTC+8 01
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Trimming Outgroup for Bayesian Phylogeography Analysis
I have the same question. Does anyone know how to do it? Many thanks! Ruopeng 在2016年6月22日星期三 UTC+8 01
Mar 8
Rachel Schmidt Jabaily
,
Jordan Douglas
4
Mar 8
Where did Uncorrelated Relaxed Clock go?
No problem! Just to further clarify, the original relaxed clock is still available in beauti if you
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Where did Uncorrelated Relaxed Clock go?
No problem! Just to further clarify, the original relaxed clock is still available in beauti if you
Mar 8
Ainur Mukhatayeva
,
Jordan Douglas
5
Mar 8
TreeAnnotator
Hello Jordan, Thank you so much for your help. I really appreciate it a lot. I am not quite familiar
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TreeAnnotator
Hello Jordan, Thank you so much for your help. I really appreciate it a lot. I am not quite familiar
Mar 8
James Howie
, …
Marguerite Butler
4
Mar 8
BEAST 2.7.3 - I can't Load or Import Alignment since new download
Thank you so much Remco! That solved the problem for me. I saw that there was a change working
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BEAST 2.7.3 - I can't Load or Import Alignment since new download
Thank you so much Remco! That solved the problem for me. I saw that there was a change working
Mar 8
ABedoya
,
Jordan Douglas
3
Mar 7
mrca age approaching 0
Hello Jordan, Thank you so much for your quick response! I figured that from past answers of yours to
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mrca age approaching 0
Hello Jordan, Thank you so much for your quick response! I figured that from past answers of yours to
Mar 7
kazee
,
Jordan Douglas
7
Mar 7
MRCA for internal node of gene tree and ESS for gene tree height
Hi Kazee, Just following up on this: this mrca prior initialisation problem has been resolved now,
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MRCA for internal node of gene tree and ESS for gene tree height
Hi Kazee, Just following up on this: this mrca prior initialisation problem has been resolved now,
Mar 7
Samuel Bloomfield
Mar 7
Parameter linking - could not add entry for "rateAC"
I recently updated to BEAST v2.7.3 and wanted to link some of the site models after running
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Parameter linking - could not add entry for "rateAC"
I recently updated to BEAST v2.7.3 and wanted to link some of the site models after running
Mar 7
Luis Ruedas
Mar 7
BEAUTi not saving priors
Hello: For some strange reason, BEAUTi (versions 1 and 2; in Windows) will not save priors for tmrca
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BEAUTi not saving priors
Hello: For some strange reason, BEAUTi (versions 1 and 2; in Windows) will not save priors for tmrca
Mar 7
Miguel Blázquez
,
ABedoya
2
Mar 6
Unrealistically recent divergence time estimates
Did you find an answer to this problem? This is happening to me too On Wednesday, December 28, 2022
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Unrealistically recent divergence time estimates
Did you find an answer to this problem? This is happening to me too On Wednesday, December 28, 2022
Mar 6
Ainur Mukhatayeva
Mar 6
Tree annotator
Dear community, I was running BEAST for 250 mln runs, but I am not able to annotate the tree. I used
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Tree annotator
Dear community, I was running BEAST for 250 mln runs, but I am not able to annotate the tree. I used
Mar 6
msrigyan
Mar 5
BEAST suddenly cannot find BEAGLE library anymore
Hi all, I have been running BEAST successfully on my university's server since few weeks but
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BEAST suddenly cannot find BEAGLE library anymore
Hi all, I have been running BEAST successfully on my university's server since few weeks but
Mar 5
samuel.ge...@gmail.com
Mar 3
Higher-level phylogeny in BEAST
Hi Everyone, My doubt is rather theoretical, but I would welcome some practice advice. It's been
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Higher-level phylogeny in BEAST
Hi Everyone, My doubt is rather theoretical, but I would welcome some practice advice. It's been
Mar 3
jj biodiversity
Mar 2
STACEY convergence
Dear community members, I'm trying out STACEY for the first time, and having trouble with the
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STACEY convergence
Dear community members, I'm trying out STACEY for the first time, and having trouble with the
Mar 2
Emma Kopp
,
Jordan Douglas
3
Feb 28
Plot consensus tree with HPD intervals
Hello, Thank you for your answer. Indeed for a maximum clade credibility tree, TreeAnnotator is
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Plot consensus tree with HPD intervals
Hello, Thank you for your answer. Indeed for a maximum clade credibility tree, TreeAnnotator is
Feb 28
jean-francois manen
Feb 28
Bacter: ACGAnnotator
I have a problem with ACGAnnotator running with the Ecoli ARG trees file obtained from the Bacter
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Bacter: ACGAnnotator
I have a problem with ACGAnnotator running with the Ecoli ARG trees file obtained from the Bacter
Feb 28
Suzanne Williams
,
Jordan Douglas
2
Feb 28
STARBEAST - package missing
Hi Suzanne, I have seen this issue before and it was related to the java environment. Java 17 azul
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STARBEAST - package missing
Hi Suzanne, I have seen this issue before and it was related to the java environment. Java 17 azul
Feb 28