beast-users

Dear Tim I want to know how to resume the analyze in Beast2,Could you sent me the relation the

Applications are now closed. We have a few places left so late applications will be considered on a

This is the final call for Taming the BEAST in the South Pacific, a 5-day summer short course on

Dear beast users, I am currently trying to estimate the time divergence calibration with beauti and

Hi, Sorry for the late response, I was waiting to get the new tree to see if everything was working

Hi everybody! I've been thinking about the usefulness of using linked SNPs and would like your

Hello everyone I am working with viral whole genome data (all sampled from the same year) and wanted

Yes! It took me a while, but I figured it out. I think some of the documentation has lagged behind

Dear all, I have been trying to run a divergence time analysis on a UCE data matrix (25% occupancy)

Hi everyone, I've tried running 200 mil MCMC BEAST runs but the log and tree files only contain ~

Hi Clara, The tutorial xml should run with the version linked to in the tutorial. (https://github.com

Dear Giske, thanks for pointing this out. It seems this is a regression due to a change in the

вторник, 11 февраля 2025 г. в 11:16:53 UTC+8, ACU A:

Hi everyone, I want to run BEAST on the HPC cluster of my institute. For that, I want to inform the

I posted this solution above, but reposting in case it is useful. Basically, in my case the line of

beast /path/to/yourfile.xml If on command line. I have solved this issue in gui but can exactly

Dear Mamerto, I would recommend running 2 analyses of 500 million chain length but not shorter

I have analyzed over 13000 trees from beast/staey. I used Yule model. It is my firt time using this

Have you tried as read.data or as.phylo? Also check content of tree with str().Try chatGPT I used it.

I am not an expert. It seems most try to ignore it at least for the part that is missing. The

Hello again, Now that I have looked at and thought about the results from these models, I have some

Good morning, everyone. I would appreciate some advice regarding my analysis. I am currently using

Hi Irena, I was looking for information in the group and found your message. I would like to know how

Hi Jo, Glad someone else is trying to figure this out! Just saw your new forum post as well. Good

Hi Jonathan, I have the same trouble of missing closing ) in FigTree when I tried to import trees

Just figured out way to solve this problem looking at XML file from Zhang et al. (2023; https://doi.

Hi Angelica, the SNP alignment correspond to 434 taxa and has 10853 positions. Alejandro El jue, 23

No worries, Mamerto! I guess it's nice to always learn something new here. On Wed, 22 Jan 2025 at

I'm have a dataset of 10 mitochondrial genes, which I partitioned into positions 1 & 2, and

Hi, I`m trying to install a TMA package in BEAST 2 Package Manager, but I always get an error:

Dear all, I have been trying to run a total-evidence FBD witho no sampled ancestors (ie making sure

Hi! I managed to group the countries and left the discrete partition with 15 categories (instead of

If you are uncertain about what model to use you can always run bModelTest, which will average over