Issue 762 in beast-mcmc: Spurious <coalescentEventsStatistic> block inserted in log when selecting skygrid

[beast...@googlecode.com]

Status: New
Owner: ----
Labels: Type-Defect Priority-Medium

New issue 762 by luizepid...@gmail.com: Spurious
<coalescentEventsStatistic> block inserted in log when selecting skygrid
https://code.google.com/p/beast-mcmc/issues/detail?id=762

What steps will reproduce the problem?
1. svn up && ant (aka, compile from trunk)
2. go through BEAUti and select the skygrid coalescent prior
3. If you try to run the generated XML you'll get something like:
"
Exactly one ELEMENT of type CoalescentIntervalProvider REQUIRED
at dr.xml.AbstractXMLObjectParser.parseXMLObject(Unknown Source)
at dr.xml.XMLParser.convert(Unknown Source)
at dr.xml.XMLParser.convert(Unknown Source)
at dr.xml.XMLParser.convert(Unknown Source)
at dr.xml.XMLParser.convert(Unknown Source)
at dr.xml.XMLParser.parse(Unknown Source)
at dr.app.beast.BeastMain.<init>(Unknown Source)
at dr.app.beast.BeastMain.main(Unknown Source)
Apr 03, 2015 3:16:04 PM dr.app.beast.BeastMain <init>
SEVERE: Parsing error - poorly formed BEAST file,
Dengue4.env_testskygrid.xml:
The '<coalescentEventsStatistic>' element with id, 'null', is incorrectly
constructed.
The following was expected:
Exactly one ELEMENT of type CoalescentIntervalProvider REQUIRED
java.lang.RuntimeException: Terminate
at dr.app.beast.BeastMain.<init>(Unknown Source)
at dr.app.beast.BeastMain.main(Unknown Source)
"
The reason seems to be an empty block:
<coalescentEventsStatistic>
</coalescentEventsStatistic>

that is created and inserted in the log block.


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