Issue 738 in beast-mcmc: Beauti not retaining settings when saved file is reopened.

[beast...@googlecode.com]

Status: New
Owner: ----
Labels: Type-Defect Priority-Medium

New issue 738 by jwtan...@gmail.com: Beauti not retaining settings when
saved file is reopened.
http://code.google.com/p/beast-mcmc/issues/detail?id=738

What steps will reproduce the problem?
1. Save a Beauti file with the SRD06 setting
2. Reopen the saved file and the settings have reverted to default settings
- see email below for more details.
3.

What is the expected output? What do you see instead? See above/ below


What version of the product are you using? Beast v1.8 On what operating
system? Windows 8a and 7


Please provide any additional information below.


From: jwta...@hotmail.com
To: beast...@googlegroups.com
Subject: Beauti v1.8 - saved version not retaining 'Sites' settings on
reopening?
Date: Sun, 29 Jun 2014 04:12:11 +0000

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Hi Andrews, Alexei,


Maybe this has been mentioned by others, but when I save my Beauti settings
using the 'Save As' option in the Beauti File drop-down menu, it seems that
at least the original 'Sites' settings are not preserved.



I've kept screenshots of my settings, so I knew I had selected the SRD06
model settings (which unclicks the last 'Unlink base frequencies across
codon positions' option) for my current analysis when I created the
original Beast file. But when I re-open this saved Beauti file and check
the 'Sites' settings, this last option is clicked again.



Is this a known bug in the saved Beauti files?



Thanks in advance,



Julian




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[beast...@googlecode.com]

Updates:
Labels: beauti 1.8 Milestone-Release1.8.1

Comment #1 on issue 738 by ramb...@gmail.com: Beauti not retaining settings

when saved file is reopened.
http://code.google.com/p/beast-mcmc/issues/detail?id=738

(No comment was entered for this change.)

[beast...@googlecode.com]

Updates:
Labels: -Milestone-Release1.8.1 Milestone-Release1.9

Comment #2 on issue 738 by ramb...@gmail.com: Beauti not retaining settings

[beast...@googlecode.com]

Comment #3 on issue 738 by ramb...@gmail.com: Beauti not retaining settings

when saved file is reopened.

https://code.google.com/p/beast-mcmc/issues/detail?id=738

Pushed this one back as, although I can replicate it, it is a failing of
the serialization of Java objects. Will take some work to debug and fix.

[beast...@googlecode.com]

Updates:
Labels: -Milestone-Release1.9 Milestone-Release1.8.2

Comment #4 on issue 738 by ramb...@gmail.com: Beauti not retaining settings

when saved file is reopened.
https://code.google.com/p/beast-mcmc/issues/detail?id=738

(No comment was entered for this change.)

[beast...@googlecode.com]

Updates:
Labels: -Milestone-Release1.8.2 Milestone-Release1.9

Comment #5 on issue 738 by ramb...@gmail.com: Beauti not retaining settings