running one of example cases (isotropic)

[Babak Kashir Taloori]

Dear All,

 I am kinda new to basilisk code. I am able to run the sample bump.c code in tutorial section both in serial and parallel. However, when I try examples such as isotropic.c with similar commands I receive errors.

For instance:

"qcc  -O2 -Wall isotropic.c -o isotropic -lm "

gives me this error:

/tmp/ccKboJsK.o: In function `vertex_buffer_glVertex2d':

isotropic.c:(.text+0x11034): undefined reference to `glVertex3d'

isotropic.c:(.text+0x1108d): undefined reference to `vector_multiply'

/tmp/ccKboJsK.o: In function `vertex_buffer_glEnd':

isotropic.c:(.text+0x110f9): undefined reference to `glEnd'

/tmp/ccKboJsK.o: In function `vertex_buffer_glColor3f':

isotropic.c:(.text+0x11577): undefined reference to `glColor3f'

/tmp/ccKboJsK.o: In function `begin_draw_lines':

isotropic.c:(.text+0x115f8): undefined reference to `glMatrixMode'

isotropic.c:(.text+0x115fd): undefined reference to `glPushMatrix'

isotropic.c:(.text+0x1161b): undefined reference to `glTranslatef'

isotropic.c:(.text+0x1165f): undefined reference to `glLineWidth'

/tmp/ccKboJsK.o: In function `begin_colorized':

isotropic.c:(.text+0x117ea): undefined reference to `glTexImage1D'

isotropic.c:(.text+0x117fe): undefined reference to `glTexParameteri'

isotropic.c:(.text+0x11812): undefined reference to `glTexParameteri'

isotropic.c:(.text+0x11826): undefined reference to `glTexParameteri'

isotropic.c:(.text+0x1183a): undefined reference to `glTexParameteri'

isotropic.c:(.text+0x11844): undefined reference to `glEnable'

/tmp/ccKboJsK.o: In function `vertex_buffer_glNormal3d':

isotropic.c:(.text+0x118b7): undefined reference to `glNormal3d'

/tmp/ccKboJsK.o: In function `vertex_buffer_glVertex3d':

isotropic.c:(.text+0x11987): undefined reference to `glVertex3d'

isotropic.c:(.text+0x119ed): undefined reference to `vector_multiply'

/tmp/ccKboJsK.o: In function `assemble_node':

isotropic.c:(.text+0x1dbe7): undefined reference to `reset_node_type'

isotropic.c:(.text+0x1dc08): undefined reference to `reset_node_type'

isotropic.c:(.text+0x1dc1a): undefined reference to `reset_node_type'

isotropic.c:(.text+0x1dc62): undefined reference to `reset_node_type'

isotropic.c:(.text+0x1dcb6): undefined reference to `reset_node_type'

/tmp/ccKboJsK.o: In function `bview_new':

isotropic.c:(.text+0x2e2da): undefined reference to `gl_trackball'

isotropic.c:(.text+0x2e32b): undefined reference to `framebuffer_new'

isotropic.c:(.text+0x2e336): undefined reference to `init_gl'

/tmp/ccKboJsK.o: In function `bview_destroy':

isotropic.c:(.text+0x2e369): undefined reference to `framebuffer_destroy'

/tmp/ccKboJsK.o: In function `vertex_buffer_glBegin':

isotropic.c:(.text+0x2e431): undefined reference to `glGetFloatv'

isotropic.c:(.text+0x2e4da): undefined reference to `matrix_multiply'

isotropic.c:(.text+0x2e4ff): undefined reference to `gl_build_rotmatrix'

isotropic.c:(.text+0x2e554): undefined reference to `matrix_multiply'

isotropic.c:(.text+0x2e5ab): undefined reference to `glBegin'

/tmp/ccKboJsK.o: In function `compile_expression':

isotropic.c:(.text+0x2e70e): undefined reference to `parse_node'

isotropic.c:(.text+0x2e953): undefined reference to `free_node'

isotropic.c:(.text+0x2ea4f): undefined reference to `free_node'

isotropic.c:(.text+0x2ea92): undefined reference to `free_node'

/tmp/ccKboJsK.o: In function `draw':

isotropic.c:(.text+0x2eb1a): undefined reference to `glMatrixMode'

isotropic.c:(.text+0x2eb1f): undefined reference to `glLoadIdentity'

isotropic.c:(.text+0x2eb68): undefined reference to `gluPerspective'

isotropic.c:(.text+0x2eb72): undefined reference to `glMatrixMode'

isotropic.c:(.text+0x2eb77): undefined reference to `glLoadIdentity'

isotropic.c:(.text+0x2eb8a): undefined reference to `glTranslatef'

isotropic.c:(.text+0x2eb96): undefined reference to `gl_build_rotmatrix'

isotropic.c:(.text+0x2eb9e): undefined reference to `glMultMatrixf'

isotropic.c:(.text+0x2ebf3): undefined reference to `glMultMatrixf'

isotropic.c:(.text+0x2ec33): undefined reference to `glScalef'

isotropic.c:(.text+0x2ec4b): undefined reference to `glClearColor'

isotropic.c:(.text+0x2ec55): undefined reference to `glClear'

isotropic.c:(.text+0x2ec5e): undefined reference to `gl_get_frustum'

isotropic.c:(.text+0x2ec95): undefined reference to `gluPerspective'

isotropic.c:(.text+0x2ec9f): undefined reference to `glMatrixMode'

isotropic.c:(.text+0x2eca4): undefined reference to `glLoadIdentity'

isotropic.c:(.text+0x2ecba): undefined reference to `glTranslatef'

/tmp/ccKboJsK.o: In function `end_draw_lines':

isotropic.c:(.text+0x2ecda): undefined reference to `glMatrixMode'

isotropic.c:(.text+0x2ecdf): undefined reference to `glPopMatrix'

/tmp/ccKboJsK.o: In function `gl_StrokeCharacter':

isotropic.c:(.text+0x343fa): undefined reference to `ogStrokeMonoRoman'

isotropic.c:(.text+0x34407): undefined reference to `ogStrokeMonoRoman'

/tmp/ccKboJsK.o: In function `gl_StrokeString':

isotropic.c:(.text+0x344fe): undefined reference to `ogStrokeMonoRoman'

isotropic.c:(.text+0x3450f): undefined reference to `ogStrokeMonoRoman'

isotropic.c:(.text+0x345b1): undefined reference to `glTranslatef'

isotropic.c:(.text+0x345d6): undefined reference to `ogStrokeMonoRoman'

isotropic.c:(.text+0x345f3): undefined reference to `glTranslatef'

/tmp/ccKboJsK.o: In function `gl_StrokeWidth':

isotropic.c:(.text+0x3461a): undefined reference to `ogStrokeMonoRoman'

isotropic.c:(.text+0x34623): undefined reference to `ogStrokeMonoRoman'

/tmp/ccKboJsK.o: In function `gl_StrokeLength':

isotropic.c:(.text+0x3465b): undefined reference to `ogStrokeMonoRoman'

isotropic.c:(.text+0x34662): undefined reference to `ogStrokeMonoRoman'

/tmp/ccKboJsK.o: In function `gl_StrokeHeight':

isotropic.c:(.text+0x346e4): undefined reference to `ogStrokeMonoRoman'

/tmp/ccKboJsK.o: In function `view':

isotropic.c:(.text+0x349bb): undefined reference to `gl_axis_to_quat'

isotropic.c:(.text+0x34a84): undefined reference to `gl_axis_to_quat'

isotropic.c:(.text+0x34ae1): undefined reference to `gl_axis_to_quat'

isotropic.c:(.text+0x34af9): undefined reference to `gl_add_quats'

isotropic.c:(.text+0x34b3a): undefined reference to `gl_axis_to_quat'

isotropic.c:(.text+0x34b52): undefined reference to `gl_add_quats'

isotropic.c:(.text+0x34b66): undefined reference to `gl_add_quats'

isotropic.c:(.text+0x34e88): undefined reference to `gl_axis_to_quat'

isotropic.c:(.text+0x34f69): undefined reference to `framebuffer_destroy'

isotropic.c:(.text+0x34f76): undefined reference to `framebuffer_new'

isotropic.c:(.text+0x34f81): undefined reference to `init_gl'

isotropic.c:(.text+0x35007): undefined reference to `gl_trackball'

isotropic.c:(.text+0x3501b): undefined reference to `gl_add_quats'

isotropic.c:(.text+0x350fc): undefined reference to `gl_axis_to_quat'

isotropic.c:(.text+0x3514c): undefined reference to `gl_axis_to_quat'

isotropic.c:(.text+0x3533c): undefined reference to `gl_axis_to_quat'

isotropic.c:(.text+0x3534f): undefined reference to `gl_add_quats'

isotropic.c:(.text+0x35390): undefined reference to `gl_axis_to_quat'

isotropic.c:(.text+0x353a3): undefined reference to `gl_add_quats'

isotropic.c:(.text+0x353ef): undefined reference to `gl_axis_to_quat'

isotropic.c:(.text+0x35436): undefined reference to `gl_axis_to_quat'

isotropic.c:(.text+0x35492): undefined reference to `gl_axis_to_quat'

isotropic.c:(.text+0x354d0): undefined reference to `gl_axis_to_quat'

isotropic.c:(.text+0x354e3): undefined reference to `gl_add_quats'

/tmp/ccKboJsK.o: In function `begin_translate':

isotropic.c:(.text+0x35540): undefined reference to `glMatrixMode'

isotropic.c:(.text+0x35545): undefined reference to `glPushMatrix'

isotropic.c:(.text+0x3555b): undefined reference to `glTranslatef'

/tmp/ccKboJsK.o: In function `end_translate':

isotropic.c:(.text+0x35581): undefined reference to `glMatrixMode'

isotropic.c:(.text+0x35586): undefined reference to `glPopMatrix'

/tmp/ccKboJsK.o: In function `begin_mirror':

isotropic.c:(.text+0x355c9): undefined reference to `glMatrixMode'

isotropic.c:(.text+0x355ce): undefined reference to `glPushMatrix'

isotropic.c:(.text+0x3579b): undefined reference to `matrix_multiply'

isotropic.c:(.text+0x357a3): undefined reference to `glMultMatrixf'

isotropic.c:(.text+0x357ac): undefined reference to `gl_get_frustum'

/tmp/ccKboJsK.o: In function `draw_vof':

isotropic.c:(.text+0x35d26): undefined reference to `glDisable'

isotropic.c:(.text+0x36cf0): undefined reference to `sphere_in_frustum'

isotropic.c:(.text+0x36d7b): undefined reference to `sphere_diameter'

isotropic.c:(.text+0x36dfb): undefined reference to `sphere_in_frustum'

isotropic.c:(.text+0x36e7a): undefined reference to `sphere_diameter'

isotropic.c:(.text+0x36f80): undefined reference to `glTexCoord1d'

/tmp/ccKboJsK.o: In function `cells':

isotropic.c:(.text+0x37857): undefined reference to `sphere_in_frustum'

isotropic.c:(.text+0x3792b): undefined reference to `sphere_diameter'

/tmp/ccKboJsK.o: In function `squares':

isotropic.c:(.text+0x37a82): undefined reference to `glShadeModel'

isotropic.c:(.text+0x37e96): undefined reference to `glDisable'

isotropic.c:(.text+0x3923e): undefined reference to `glTexCoord1d'

isotropic.c:(.text+0x392c1): undefined reference to `sphere_in_frustum'

isotropic.c:(.text+0x39387): undefined reference to `sphere_diameter'

isotropic.c:(.text+0x396fb): undefined reference to `sphere_in_frustum'

isotropic.c:(.text+0x397b3): undefined reference to `sphere_diameter'

isotropic.c:(.text+0x39a82): undefined reference to `glTexCoord1d'

isotropic.c:(.text+0x39cac): undefined reference to `glTexCoord1d'

/tmp/ccKboJsK.o: In function `box':

isotropic.c:(.text+0x39d6f): undefined reference to `ogStrokeMonoRoman'

isotropic.c:(.text+0x39d78): undefined reference to `ogStrokeMonoRoman'

isotropic.c:(.text+0x39d87): undefined reference to `ogStrokeMonoRoman'

isotropic.c:(.text+0x39df2): undefined reference to `glMatrixMode'

isotropic.c:(.text+0x39e61): undefined reference to `glPushMatrix'

isotropic.c:(.text+0x39eeb): undefined reference to `glTranslatef'

isotropic.c:(.text+0x39f07): undefined reference to `glRotatef'

isotropic.c:(.text+0x39f20): undefined reference to `glScalef'

isotropic.c:(.text+0x39f6b): undefined reference to `glPopMatrix'

isotropic.c:(.text+0x39f70): undefined reference to `glPushMatrix'

isotropic.c:(.text+0x3a00d): undefined reference to `glTranslatef'

isotropic.c:(.text+0x3a026): undefined reference to `glScalef'

isotropic.c:(.text+0x3a035): undefined reference to `glPopMatrix'

isotropic.c:(.text+0x3a03a): undefined reference to `glPushMatrix'

isotropic.c:(.text+0x3a0dd): undefined reference to `glTranslatef'

isotropic.c:(.text+0x3a0f9): undefined reference to `glRotatef'

isotropic.c:(.text+0x3a10f): undefined reference to `glScalef'

isotropic.c:(.text+0x3a11e): undefined reference to `glPopMatrix'

isotropic.c:(.text+0x3a12c): undefined reference to `glPushMatrix'

isotropic.c:(.text+0x3a1e3): undefined reference to `glTranslatef'

isotropic.c:(.text+0x3a209): undefined reference to `glScalef'

isotropic.c:(.text+0x3a218): undefined reference to `glPopMatrix'

isotropic.c:(.text+0x3a21d): undefined reference to `glPushMatrix'

isotropic.c:(.text+0x3a2ae): undefined reference to `glTranslatef'

isotropic.c:(.text+0x3a2c7): undefined reference to `glScalef'

isotropic.c:(.text+0x3a2d6): undefined reference to `glPopMatrix'

isotropic.c:(.text+0x3a2db): undefined reference to `glPushMatrix'

isotropic.c:(.text+0x3a372): undefined reference to `glTranslatef'

isotropic.c:(.text+0x3a38e): undefined reference to `glRotatef'

isotropic.c:(.text+0x3a3a7): undefined reference to `glScalef'

isotropic.c:(.text+0x3a3b6): undefined reference to `glPopMatrix'

/tmp/ccKboJsK.o: In function `isosurface':

isotropic.c:(.text+0x3ac57): undefined reference to `glShadeModel'

isotropic.c:(.text+0x3aeba): undefined reference to `polygonize'

isotropic.c:(.text+0x3b216): undefined reference to `glDisable'

isotropic.c:(.text+0x3b8b4): undefined reference to `sphere_diameter'

isotropic.c:(.text+0x3baeb): undefined reference to `sphere_in_frustum'

isotropic.c:(.text+0x3bbc6): undefined reference to `glTexCoord1d'

/tmp/ccKboJsK.o: In function `draw_string':

isotropic.c:(.text+0x3c159): undefined reference to `glMatrixMode'

isotropic.c:(.text+0x3c15e): undefined reference to `glPushMatrix'

isotropic.c:(.text+0x3c163): undefined reference to `glLoadIdentity'

isotropic.c:(.text+0x3c16d): undefined reference to `glMatrixMode'

isotropic.c:(.text+0x3c172): undefined reference to `glPushMatrix'

isotropic.c:(.text+0x3c177): undefined reference to `glLoadIdentity'

isotropic.c:(.text+0x3c1c6): undefined reference to `glLineWidth'

isotropic.c:(.text+0x3c1cc): undefined reference to `ogStrokeMonoRoman'

isotropic.c:(.text+0x3c1d6): undefined reference to `ogStrokeMonoRoman'

isotropic.c:(.text+0x3c27b): undefined reference to `ogStrokeMonoRoman'

isotropic.c:(.text+0x3c2f0): undefined reference to `glTranslatef'

isotropic.c:(.text+0x3c30b): undefined reference to `glScalef'

isotropic.c:(.text+0x3c31d): undefined reference to `glMatrixMode'

isotropic.c:(.text+0x3c322): undefined reference to `glPopMatrix'

isotropic.c:(.text+0x3c32c): undefined reference to `glMatrixMode'

isotropic.c:(.text+0x3c331): undefined reference to `glPopMatrix'

isotropic.c:(.text+0x3c363): undefined reference to `glTranslatef'

isotropic.c:(.text+0x3c404): undefined reference to `glTranslatef'

/tmp/ccKboJsK.o: In function `save':

isotropic.c:(.text+0x3d45e): undefined reference to `framebuffer_image'

isotropic.c:(.text+0x3d48f): undefined reference to `gl_write_image'

isotropic.c:(.text+0x3d4fb): undefined reference to `glFinish'

isotropic.c:(.text+0x3d5b9): undefined reference to `framebuffer_image'

isotropic.c:(.text+0x3d5ce): undefined reference to `gl_write_image'

isotropic.c:(.text+0x3d6df): undefined reference to `glFinish'

/tmp/ccKboJsK.o: In function `gl_StrokeCharacter':

isotropic.c:(.text+0x344a5): undefined reference to `glTranslatef'

/tmp/ccKboJsK.o: In function `begin_translate':

isotropic.c:(.text+0x35569): undefined reference to `gl_get_frustum'

/tmp/ccKboJsK.o: In function `end_translate':

isotropic.c:(.text+0x35590): undefined reference to `gl_get_frustum'

 would sb in the community hint me how I can run this "isotropic" case in parallel and where was my mistake?

Regards

[Babak Kashir Taloori]

Also using command "make isotropic.tst" yields this error to me:

" make isotropic.tst"
qcc -autolink -O2 -fopenmp -g -Wall -pipe -D_FORTIFY_SOURCE=2 -DDUMBGL -o isotropic/isotropic isotropic.c -lm
qcc -autolink -O2 -fopenmp -g -Wall -pipe -D_FORTIFY_SOURCE=2 -DDUMBGL -o isotropic/isotropic isotropic.c  -lm
In file included from /usr/include/stdint.h:25:0,
                 from /opt/rit/spack-app/linux-rhel7-x86_64/gcc-4.8.5/gcc-7.3.0-xegsmw4io2dcncdni4rqhfmhuzljcg3l/lib/gcc/x86_64-pc-linux-gnu/7.3.0/include/stdint.h:9,
                 from isotropic-cpp.c:6:
/usr/include/features.h:330:4: warning: #warning _FORTIFY_SOURCE requires compiling with optimization (-O) [-Wcpp]
 #  warning _FORTIFY_SOURCE requires compiling with optimization (-O)
    ^~~~~~~
/usr/bin/ld: cannot find -lfb_dumb
collect2: error: ld returned 1 exit status
make: *** [isotropic.s] Error 1
make: *** [isotropic.s] Error 1

Would you please guide me? What should I do? 

[Stephane Popinet]

That is because this example uses online visualisation, see:

http://basilisk.fr/src/gl/INSTALL

For testing, you could just remove the visualisation altogether,
otherwise you need to link with the visualisation libraries (see details
above).

cheers,

Stephane

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