Combine Fastq from multiple runs

[Nihir Patel]

Hi

I am trying to use CLI to merge Fastq from a single sample. I can do that using web browser by first combining and creating new sample ID within the project, followed by FASTQ-toolkit run.

I am not 100% sure how to perform the combine task using the CLI, one of the issues is that the FASTQ-toolkit doesn't recognize biosample within a specific project, instead when I provide bio sample ID "-o sample-id" it launches app to Merge all Fastq associated with the biosample even the one from other projects.

Thanks