Re: bartender error

赵路

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Jun 26, 2018, 5:47:49 PM6/26/18

to Zhimin Liu, Bartender

Hey Zhimin,

It's great to hear from u. It is most likely integer overflow problem. I will try to put a fix for this. Will keep u posted in this.

Lu

On Tue, Jun 26, 2018, 5:28 PM zhimin.liu <zhimi...@stonybrook.edu> wrote:

Hi Lu,

Sorry to bother you. When I use the bartender to cluster a very large file (~1,239,437,762 barcodes and ~3000 unique barcodes), it gave me an error in the attachment. When I use a small file (e.g. head -10000), it is working fine. I might send you a similar error before. But I could not find the email. Do you have any idea about the error? Thank you!

Best,
Zhimin

赵路

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Jun 29, 2018, 7:04:35 PM6/29/18

to Zhimin Liu, Bartender

Hey Zhimin,

Do you mind try this change for me on the real data? https://github.com/LaoZZZZZ/bartender-1.1/pull/61

git clone -b fix_integer_overflow https://github.com/LaoZZZZZ/bartender-1.1.git

Thanks.

Lu

--

Sincerely,

Lu

zhimin.liu

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Jun 29, 2018, 7:13:16 PM6/29/18

to 赵路, Bartender

Hi Lu,

Great! Sure, will let you know the result. Thanks!

Zhimin

Original Message

Sender: 赵路<luzha...@gmail.com>

Recipient: Zhimin Liu<zhimi...@stonybrook.edu>

Cc: Bartender<bartenderRa...@googlegroups.com>

Date: Friday, Jun 29, 2018 16:04

Subject: Re: bartender error

zhimin.liu

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Jul 1, 2018, 5:28:05 PM7/1/18

to 赵路, Bartender

Hi Lu,

It is working. There is no error when I do the cluster with the real data now. Thanks!

Best,

Zhimin

Original Message

Sender: zhimin.liu<zhimi...@stonybrook.edu>

Recipient: 赵路<luzha...@gmail.com>

Cc: Bartender<bartenderRa...@googlegroups.com>

Date: Friday, Jun 29, 2018 16:13

Subject: Re: bartender error

赵路

unread,

Jul 1, 2018, 5:40:18 PM7/1/18

to zhimin.liu, Bartender

Cool. Then I will merge the fix into master. Thanks

On Sun, Jul 1, 2018 at 5:28 PM, zhimin.liu <zhimi...@stonybrook.edu> wrote:

Hi Lu,

It is working. There is no error when I do the cluster with the real data now. Thanks!

Best,
Zhimin

Original Message

Sender: zhimin.liu<zhimin.liu@stonybrook.edu>
Recipient: 赵路<luzhao1986@gmail.com>
Cc: Bartender<bartenderRandomBarc...@googlegroups.com>

Date: Friday, Jun 29, 2018 16:13
Subject: Re: bartender error

Hi Lu,

Great! Sure, will let you know the result. Thanks!

Zhimin

Original Message

Sender: 赵路<luzhao1986@gmail.com>
Recipient: Zhimin Liu<zhimi...@stonybrook.edu>
Cc: Bartender<bartenderRandomBarc...@googlegroups.com>

Date: Friday, Jun 29, 2018 16:04
Subject: Re: bartender error

Hey Zhimin,

Do you mind try this change for me on the real data? https://github.com/LaoZZZZZ/bartender-1.1/pull/61
git clone -b fix_integer_overflow https://github.com/LaoZZZZZ/bartender-1.1.git
Thanks.
Lu
On Tue, Jun 26, 2018 at 5:47 PM, 赵路 <luzha...@gmail.com> wrote:
Hey Zhimin,
It's great to hear from u. It is most likely integer overflow problem. I will try to put a fix for this. Will keep u posted in this.
Lu

On Tue, Jun 26, 2018, 5:28 PM zhimin.liu <zhimi...@stonybrook.edu> wrote:
Hi Lu,

Sorry to bother you. When I use the bartender to cluster a very large file (~1,239,437,762 barcodes and ~3000 unique barcodes), it gave me an error in the attachment. When I use a small file (e.g. head -10000), it is working fine. I might send you a similar error before. But I could not find the email. Do you have any idea about the error? Thank you!

Best,
Zhimin

--
Sincerely,

Lu

--

Sincerely,

Lu

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