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Welcome to Bartender's forum. If you have any question or suggestions on Bartender. Please kindly leave a message or create a discussion here! Thank you

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Tomas Grudny, 赵路2

9/8/22

Relevance of frequency

On Thursday, September 8, 2022 at 10:17:34 PM UTC-4 tgr...@ethz.ch wrote: Hello, I am extracting

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Relevance of frequency

On Thursday, September 8, 2022 at 10:17:34 PM UTC-4 tgr...@ethz.ch wrote: Hello, I am extracting

9/8/22

4/20/20

bartender_combiner_com gives no output. why?

Dear bartender community, I am running bartender_combiner_com after extractor_com, single_com and I

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bartender_combiner_com gives no output. why?

Dear bartender community, I am running bartender_combiner_com after extractor_com, single_com and I

4/20/20

3/9/20

Hi, please excuse this rather basic question, but after installing bartender and trying to use it, I

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Hi, please excuse this rather basic question, but after installing bartender and trying to use it, I

3/9/20

mt...@sanger.ac.uk

1/31/20

bartender_extractor: src/bartender_extractor.cpp:126: int main(int, char**): Assertion `dir == 0 || dir == -1 || dir == 1' failed.

Hi, First of all, thanks for developing the tool and the test datasets and scripts. I am exploring

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bartender_extractor: src/bartender_extractor.cpp:126: int main(int, char**): Assertion `dir == 0 || dir == -1 || dir == 1' failed.

Hi, First of all, thanks for developing the tool and the test datasets and scripts. I am exploring

1/31/20

Peter Owuor, 赵路2

12/14/19

Reverse complement barcodes

Hi Peter, Bartender supports handling different strand directions at barcode extraction step. See

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Reverse complement barcodes

Hi Peter, Bartender supports handling different strand directions at barcode extraction step. See

12/14/19

May Ho, 赵路4

8/30/19

regex_error when extracting barcode

Hi May, Sorry for the late reply. I could not reproduce the problem in my mac laptop. But I suspect

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regex_error when extracting barcode

Hi May, Sorry for the late reply. I could not reproduce the problem in my mac laptop. But I suspect

8/30/19

3/17/19

Re: Questions concerning seed selection in Bartender paper (Bioinformatics 2018)

Dear Pina Fanny Ida, Thanks for your interests in our Bartender tool. The "Sequence" in

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Re: Questions concerning seed selection in Bartender paper (Bioinformatics 2018)

Dear Pina Fanny Ida, Thanks for your interests in our Bartender tool. The "Sequence" in

3/17/19

msma...@gmail.com, 赵路2

12/13/18

Clustering output depends on order of barcodes

---------- Forwarded message --------- From: 赵路 <luzha...@gmail.com> Date: Thu, Dec 13, 2018

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Clustering output depends on order of barcodes

---------- Forwarded message --------- From: 赵路 <luzha...@gmail.com> Date: Thu, Dec 13, 2018

12/13/18

赵路, zhimin.liu5

7/1/18

Re: bartender error

Cool. Then I will merge the fix into master. Thanks On Sun, Jul 1, 2018 at 5:28 PM, zhimin.liu <

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Re: bartender error

Cool. Then I will merge the fix into master. Thanks On Sun, Jul 1, 2018 at 5:28 PM, zhimin.liu <

7/1/18

msma...@gmail.com, 赵路3

4/3/18

Merging barcodes across time points

Hey Michael, There is one output file with suffix "barcode.csv" in the clustering result.

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Merging barcodes across time points

Hey Michael, There is one output file with suffix "barcode.csv" in the clustering result.

4/3/18

ga...@nyu.edu, 赵路2

11/2/17

Clustering in high complexity and low complexity barcode libraries

Hi Grace, I don't know how you data looks like. But the following are general rules that helps

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Clustering in high complexity and low complexity barcode libraries

Hi Grace, I don't know how you data looks like. But the following are general rules that helps

11/2/17

msma...@gmail.com, 赵路4

8/3/17

Clustering question

Specifically, if the two barcodes are between 1 and 3 mismatches from each other, I'm getting

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Clustering question

Specifically, if the two barcodes are between 1 and 3 mismatches from each other, I'm getting

8/3/17

msma...@gmail.com, 赵路4

8/3/17

Barcodes on reverse complement

Thanks, that works! Michael On Saturday, July 29, 2017 at 4:36:47 AM UTC-4, 赵路 wrote: Hi Michael,

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Barcodes on reverse complement

Thanks, that works! Michael On Saturday, July 29, 2017 at 4:36:47 AM UTC-4, 赵路 wrote: Hi Michael,

8/3/17

msma...@gmail.com, 赵路11

5/19/17

combiner tool loses barcodes appearing only at later time points?

Hey Manhart, the log and commands looks good to me. Would u please share me part of your raw data?

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combiner tool loses barcodes appearing only at later time points?

Hey Manhart, the log and commands looks good to me. Would u please share me part of your raw data?

5/19/17

赵路, … Sasha Levy4

4/6/17

How does Bartender handle UMI?

@Sasha, thanks for answering this question. On Tue, Apr 4, 2017 at 8:08 AM, Sasha Levy <sashaflevy

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How does Bartender handle UMI?

@Sasha, thanks for answering this question. On Tue, Apr 4, 2017 at 8:08 AM, Sasha Levy <sashaflevy

4/6/17

12/6/16

Fwd: bartender algorithm

---------- Forwarded message ---------- From: 赵路 <luzha...@gmail.com> Date: Mon, Dec 5, 2016

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Fwd: bartender algorithm

---------- Forwarded message ---------- From: 赵路 <luzha...@gmail.com> Date: Mon, Dec 5, 2016

12/6/16

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