New Release Available

[mkt...@umich.edu]

On 10/24/2012, a new release of bamUtil was made available, version 1.0.5.

The new release is available at: http://genome.sph.umich.edu/wiki/BamUtil#Releases

BamUtil.1.0.5 Release Notes

• Update to dedup
  • Update logic for which pair to keep if they have the same quality
• Update to polishBam
  • Update to print the number of successful header additions
• Update to recab
  • Update to print the number of base skipped due to the base quality
• General Updates
• Update to add compile option to compile without C++0x/C++11

This release uses the newly released libStatGen v1.0.5 also released on 10/24/2012:

• Updates:
  • Cleanup compile warnings
  • Support compiling without ZLIB (use: make ZLIB_AVAIL=0)
• BAM Updates:
  • Update to add error messages about failing to add a header
  • Handle a vtype of 'B' in the TAG field (treats it like a string)