Extra space in bamtools convert to fasta ?

[Assaf Gordon]

Hello,

When running "bamtools convert -format fasta", there's a space character between the ">" and the read identifier.

This happens in ./src/toolkit/bamtools_convert.cpp line 889 in ConvertTool::ConvertToolPrivate::PrintBed():
===
// print header
m_out << "> " << a.Name << endl;
===

Is that intentional or a bug ?

-gordon

[Assaf Gordon]

A typo: it's in "PrintFasta()", not "PrintBed()".

[Derek Barnett]

Nope, that wasn't intentional, purely an oversight.
It's now been updated.

Thanks for the headsup.
- Derek