BamUtil Version 1.0.7 released

[mkt...@umich.edu]

On 1/29/2013, BamUtil version 1.0.7 was released.

Updates:

• Update to fix some compile issues on ubuntu 12.10
• Update use of SamRecord::getStringTag to expect the return of a const string pointer due to libStatGen v1.0.7 updates
• Update SamReferenceInfo usage due to libStatGen v1.0.7 updates
• Update to diff
  • Fix DIFF to test and properly handle running out of available records. Previously no message was printed when this happened and there was a bug for which file it freed
• Update to clipOverlap
  • Update to facilitate adding other overlap handling functions
• Update to mergeBam (formerly RGMergeBam)
  • Rename RGMergeBam to MergeBam
  • Update to handle files that already have an RG

If you are interested in this Update, the new version can be downloaded at:

http://genome.sph.umich.edu/wiki/BamUtil#Releases

BamUtil version 1.0.7 requires an upgrade to libStatGen.  It requires libStatGen version 1.0.7 or later (released 1/29/2013).

Let me know if you have any questions.

Mary Kate Wing