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bamUtils
1–15 of 15
Welcome to bamUtils google group!
Please visit
http://genome.sph.umich.
edu/wiki/BamUtil
for detailed information of bamUtil software.
Feel free to join the group and ask further questions on bamUtil.
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Bren K
2
10/16/19
Q&A
Cannot Find a bamUtil Version with "dedup_LowMem --allReadNames" Option
I also just tried the latest version of "gotCloud" and it also does not contain the "
unread,
allReadNames
Q&A
Cannot Find a bamUtil Version with "dedup_LowMem --allReadNames" Option
I also just tried the latest version of "gotCloud" and it also does not contain the "
10/16/19
Coby Viner
,
Mary Kate Wing
3
7/31/18
Q&A
Suggested citation?
Great—thanks! -- Coby On Mon, Jul 30, 2018 at 9:36 PM, Mary Kate Wing <mkt...@umich.edu> wrote
unread,
Q&A
Suggested citation?
Great—thanks! -- Coby On Mon, Jul 30, 2018 at 9:36 PM, Mary Kate Wing <mkt...@umich.edu> wrote
7/31/18
oabio...@gmail.com
,
Mary Kate Wing
2
10/4/16
Q&A
recal 2-step
Having the option to split recalibration into 2 steps is a good suggestion. It is not currently
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Q&A
recal 2-step
Having the option to split recalibration into 2 steps is a good suggestion. It is not currently
10/4/16
oabio...@gmail.com
,
Mary Kate Wing
7
11/2/15
Q&A
dedup from stdin
I guess you are right in that it would not save one write, but practically, it may be more efficient
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Q&A
dedup from stdin
I guess you are right in that it would not save one write, but practically, it may be more efficient
11/2/15
Da-eun Ryu
,
Mary Kate Wing
2
9/23/14
Q&A
baseSum ERROR
By default, bam stats assumes that a single read covers less than 1024 reference bases. This type of
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Q&A
baseSum ERROR
By default, bam stats assumes that a single read covers less than 1024 reference bases. This type of
9/23/14
bamUtils
5/14/14
Announcement
BamUtil Version 1.0.12 released
BamUtil.1.0.12 Release Notes BamUtil.1.0.12.tgz - Released 5/14/2014 Requires, but does not include:
unread,
Announcement
BamUtil Version 1.0.12 released
BamUtil.1.0.12 Release Notes BamUtil.1.0.12.tgz - Released 5/14/2014 Requires, but does not include:
5/14/14
Thomas Keane
,
Mary Kate Wing
4
3/26/14
Q&A
Removing multiple tags with squeeze
No problem. Just let me know if you have any other questions or issues regarding bamUtils. Mary Kate
unread,
Q&A
Removing multiple tags with squeeze
No problem. Just let me know if you have any other questions or issues regarding bamUtils. Mary Kate
3/26/14
bamUtils
2/28/14
Announcement
BamUtil Version 1.0.11 released
BamUtil.1.0.11 Release Notes BamUtil.1.0.11.tgz - Released 2/28/2014 Requires, but does not include:
unread,
Announcement
BamUtil Version 1.0.11 released
BamUtil.1.0.11 Release Notes BamUtil.1.0.11.tgz - Released 2/28/2014 Requires, but does not include:
2/28/14
Robert Sicko
,
mkt...@umich.edu
8
2/28/14
Q&A
Error using splitBam in bamUtils Version: 1.0.10
Sorry for the delay in responding - I fixed it, but then didn't have a chance to do the official
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Q&A
Error using splitBam in bamUtils Version: 1.0.10
Sorry for the delay in responding - I fixed it, but then didn't have a chance to do the official
2/28/14
bamUtils
1/2/14
Announcement
BamUtil Version 1.0.10 released
BamUtil.1.0.10 Release Notes Requires, libStatGen version 1.0.10 All Add PhoneHome/version checking
unread,
Announcement
BamUtil Version 1.0.10 released
BamUtil.1.0.10 Release Notes Requires, libStatGen version 1.0.10 All Add PhoneHome/version checking
1/2/14
pegos...@gmail.com
,
Mary Kate Wing
11
9/13/13
Q&A
missing EOF marker after splitting bam file
HI Mary Kate, yes, I see now. I run again splitbam on another smalller bam file that I created and
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Q&A
missing EOF marker after splitting bam file
HI Mary Kate, yes, I see now. I run again splitbam on another smalller bam file that I created and
9/13/13
bamUtils
7/7/13
Announcement
BamUtil Version 1.0.9 released
On 7/7/2013, BamUtil version 1.0.9 was released. Update to mergeBam Update to ignore PG lines with
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Announcement
BamUtil Version 1.0.9 released
On 7/7/2013, BamUtil version 1.0.9 was released. Update to mergeBam Update to ignore PG lines with
7/7/13
mkt...@umich.edu
1/29/13
Announcement
BamUtil Version 1.0.7 released
On 1/29/2013, BamUtil version 1.0.7 was released. Updates: Update to fix some compile issues on
unread,
Announcement
BamUtil Version 1.0.7 released
On 1/29/2013, BamUtil version 1.0.7 was released. Updates: Update to fix some compile issues on
1/29/13
bamUtils
11/29/12
Announcement
BamUtil Version 1.0.6 released
On 11/14/2012, BamUtil version 1.0.6 was released. Updates: trimBam - Update to allow trimming a
unread,
Announcement
BamUtil Version 1.0.6 released
On 11/14/2012, BamUtil version 1.0.6 was released. Updates: trimBam - Update to allow trimming a
11/29/12
mkt...@umich.edu
11/5/12
Announcement
New Release Available
On 10/24/2012, a new release of bamUtil was made available, version 1.0.5. The new release is
unread,
Announcement
New Release Available
On 10/24/2012, a new release of bamUtil was made available, version 1.0.5. The new release is
11/5/12