Linking BAli-Phy to local copy of GLIBC

Maya Gupta

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Apr 18, 2020, 9:12:41 PM4/18/20

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Hi,

I've been trying to run BAli-Phy 3.5.0 on a group cluster; however it has an older version of GLIBC installed on it and when I run the command "bali-phy --version" this is the output:

bali-phy: /lib64/libm.so.6: version `GLIBC_2.23' not found (required by bali-phy)

bali-phy: /lib64/libc.so.6: version `GLIBC_2.18' not found (required by /home/mayag2/Applications/bali-phy-3.5.0/bin/../lib/bali-phy/libstdc++.so.6)

I have downloaded a newer version of GLIBC onto my drive in the cluster, but I'm having trouble linking the BAli-Phy software to this newer version of GLIBC. Is there a simple way for me to do this?

Benjamin Redelings

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Apr 20, 2020, 2:29:17 PM4/20/20

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Hi,

I have tried to install a new C library before, and I think it is not really workable. I might try to create a singularity image or docker image for bali-phy that can run anywhere because it includes its own C library.

For now, I recompiled the 3.5.0 linux executable on an older cluster so that it can work with an older C library. Can you re-download the linux 64-bit executable, and let me know if it works on your cluster now?

-BenRI

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Maya Gupta

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Apr 21, 2020, 7:21:35 PM4/21/20

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Just re-downloaded it onto the cluster - it works now! Thank you!!

On Monday, April 20, 2020 at 2:29:17 PM UTC-4, benjamin...@gmail.com wrote:

Hi,

I have tried to install a new C library before, and I think it is not really workable. I might try to create a singularity image or docker image for bali-phy that can run anywhere because it includes its own C library.

For now, I recompiled the 3.5.0 linux executable on an older cluster so that it can work with an older C library. Can you re-download the linux 64-bit executable, and let me know if it works on your cluster now?

-BenRI

On 4/18/20 3:29 PM, Maya Gupta wrote:

Hi,

I've been trying to run BAli-Phy 3.5.0 on a group cluster; however it has an older version of GLIBC installed on it and when I run the command "bali-phy --version" this is the output:

bali-phy: /lib64/libm.so.6: version `GLIBC_2.23' not found (required by bali-phy)

bali-phy: /lib64/libc.so.6: version `GLIBC_2.18' not found (required by /home/mayag2/Applications/bali-phy-3.5.0/bin/../lib/bali-phy/libstdc++.so.6)

I have downloaded a newer version of GLIBC onto my drive in the cluster, but I'm having trouble linking the BAli-Phy software to this newer version of GLIBC. Is there a simple way for me to do this?

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