bali-phy: new version 3.4

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Benjamin Redelings

Dec 14, 2018, 4:59:33 PM12/14/18
Hi everyone,

I've released version 3.4 of bali-phy.  It fixes some bugs, and also
adds 16-state substitution models for RNA stems.  You can also select
characters sets from files instead of splitting the files into multiple
smaller files.

The list of changes is available here:

Packages are available for homebrew, Debian, and Ubuntu "Disco Dingo",
or you can download an archive directly at


P.S. I'm curious if anyone has opinions on how the help looks under
`bali-phy help` and `bali-phy help advanced`.

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