bp-analyze (logging.debug)

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Leonid Rusin

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Jun 24, 2020, 4:39:13 PM6/24/20
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Hello - is this known? 
 
BAli-Phy running fine on test with [--iter=150] and finishes, but post-analysis with bp-analyze [../bp-analyze dir-1 dir-2] produces this:
 
`../bali-phy-3.5.0/bin/bp-analyze", line 405
    logging.debug(f"LogFileRun: {mcmc_output}")
                                             ^`
 
System is BioLinux 8 Ubuntu 14.04 LTS. BAli-Phy version is latest (3.5, BUILD: Apr 20 2020 14:13:27, ARCH: linux x86_64)
Same result appears with no arguments fed in to bp-analyze. Reasonable fiddling doesn't help..
Any comment much appreciated.
 
Leo
 
 

Benjamin Redelings

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Jun 24, 2020, 4:49:07 PM6/24/20
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Thanks for the report!  I'm going to follow this up on the issue that you filed.

-BenRI

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