It looks like you're getting a bug from launching pigpio, in the Pilots_Log you can see this error being thrown:
2020-10-25 16:13:31,332 ERROR : pigpio was not found in autopilot.external
Traceback (most recent call last):
File "/home/pi/github/autopilot/autopilot/core/pilot.py", line 580, in init_pigpio
self.pigpiod = external.start_pigpiod()
File "/home/pi/github/autopilot/autopilot/external/__init__.py", line 59, in start_pigpiod
raise ImportError('pigpio was not found in autopilot.external')
ImportError: pigpio was not found in autopilot.external
this has to do with the way pigpio used to be launched, that should be fixed in v0.3.3 (just pushed).
should add this to a general 'debugging' section of the docs: to see the stdout of autopilot when running as a systemd service, use
journalctl -u autopilot -e
let me know if still having issues