convert nifty to dti6.mat

[Mohammad Hadi Aarabi]

Dear Jason,

When I want to convert my .nii file to dti6.mat , when I run dtiFitTensor.m function, my matlab become restart. How I can fix it? Please help me.

Best,

Mohammad

[Jason Yeatman]

Hi Mohammad,

Please see the AFQ documentation page here:

http://white.stanford.edu/newlm/index.php/AFQ

You should preprocess your data with dtiInit.m

Best,

Jason

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[Mohammad Hadi Aarabi]

Dear Jason,

I tried this code before, but it gave error related to these lines:

switch lower(dwParams.fitMethod)
	case {'ls'}
	dt6FileName{1} = dtiRawFitTensorMex(dwRawAligned, dwDir.alignedBvecsFile,...
	dwDir.alignedBvalsFile, dwParams.dt6BaseName,...
	bs,[], dwParams.fitMethod,[],[],dwParams.clobber);
	case {'rt'}
	dt6FileName{1} = dtiRawFitTensorRobust(dwRawAligned, dwDir.alignedBvecsFile,...
	dwDir.alignedBvalsFile, dwParams.dt6BaseName,[],[],[], ...
	dwParams.nStep,dwParams.clobber,dwParams.noiseCalcMethod);
	case {'rtls','lsrt','all','both','trilinrt'};
	dt6FileName = ...
	dtiInitTensorFit(dwRawAligned, dwDir, dwParams, bs);
	end

On Sunday, September 28, 2014 9:39:54 PM UTC+3:30, Jason wrote:

Hi Mohammad,

Please see the AFQ documentation page here:

http://white.stanford.edu/newlm/index.php/AFQ

You should preprocess your data with dtiInit.m

Best,

Jason

On Sun, Sep 28, 2014 at 8:35 AM, Mohammad Hadi Aarabi <mohammad...@gmail.com> wrote:

Dear Jason,

When I want to convert my .nii file to dti6.mat , when I run dtiFitTensor.m function, my matlab become restart. How I can fix it? Please help me.

Best,

Mohammad

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[Mohammad Hadi Aarabi]

I see this error :

Error using dtiFitTensor

Too many input arguments.

Error in dtiRawFitTensorMex (line 243)

    [dt6,pdd] = dtiFitTensor(d,X,0,[],liberalBrainMask);

[Mohammad Hadi Aarabi]

I again tried but see this error :

Fitting the tensor model...

Error using dtiFitTensor

Too many input arguments.

Error in dtiRawFitTensorMex (line 241)

    [dt6,pdd,mdStd,faStd,pddDisp] =

    dtiFitTensor(d,X,0,bs.permutations,liberalBrainMask);

Error in dtiInitTensorFit (line 31)

dt6FileName{1} = dtiRawFitTensorMex(dwRawAligned,

dwDir.alignedBvecsFile,...

Error in dtiInit (line 278)

        dt6FileName = ...

[Ivan Granata]

Hi,

This is my problem 

can anyone help me?

Fitting the tensor model...

Error using dtiFitTensor

Too many input arguments.

Error in dtiRawFitTensorMex (line 241)

    [dt6,pdd,mdStd,faStd,pddDisp] = dtiFitTensor(d,X,0,bs.permutations,liberalBrainMask);

Error in dtiInit (line 267)

        dt6FileName{1} = dtiRawFitTensorMex(dwRawAligned, dwDir.alignedBvecsFile,...

Il giorno domenica 28 settembre 2014 20:09:54 UTC+2, Jason ha scritto:

Hi Mohammad,

Please see the AFQ documentation page here:

http://white.stanford.edu/newlm/index.php/AFQ

You should preprocess your data with dtiInit.m

Best,

Jason

On Sun, Sep 28, 2014 at 8:35 AM, Mohammad Hadi Aarabi <mohammad...@gmail.com> wrote:

Dear Jason,

When I want to convert my .nii file to dti6.mat , when I run dtiFitTensor.m function, my matlab become restart. How I can fix it? Please help me.

Best,

Mohammad

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