Auto3DEM ver. 4.05.2
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Giovanni Cardone
Dec 22, 2015, 10:53:10 PM12/22/15
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We are pleased to announce
the immediate availability of a new release of AUTO3DEM, available
at http://cryoem.ucsd.edu/programs.shtm.
This release contain minor changes and improvements, plus some additions:
- implemented a procedure for mask-focused refinement, to refine the particles parameters with respect to a sub-volume of interest. The procedure is activated using the option 'po2r mask_map' in the auto3dem configuration file;
- new programs have been added to gather statistics on a run (a3dm_dat_stats), plot the particle scores (a3dm_plot_score), select stable particles (a3dm_sel_stableparts), to rotate an icosahedral map from standard orientation to one with a five-fold axis along the z axis (a3dm_icosrotate), and to screen micrographs before processing them (a3dm_mg_inpect_prepare/a3dm_mg_inspect);
- added ability to process two half sets concurrently, optimizing the allocation of cpu resources (options 'auto evod_parallel' and 'p3dr cpu_sparse' in the ocnfiguration file);
- a tool (a3dm_snapshot) is provided to gather information about a run, to send to developers for troubleshooting.
A complete list can be found in the website and in the modification history file (MINOR_RELEASE_NOTES) provided with the software.
We hope that you will find these changes useful.
Sincerely,
Giovanni
This release contain minor changes and improvements, plus some additions:
- implemented a procedure for mask-focused refinement, to refine the particles parameters with respect to a sub-volume of interest. The procedure is activated using the option 'po2r mask_map' in the auto3dem configuration file;
- new programs have been added to gather statistics on a run (a3dm_dat_stats), plot the particle scores (a3dm_plot_score), select stable particles (a3dm_sel_stableparts), to rotate an icosahedral map from standard orientation to one with a five-fold axis along the z axis (a3dm_icosrotate), and to screen micrographs before processing them (a3dm_mg_inpect_prepare/a3dm_mg_inspect);
- added ability to process two half sets concurrently, optimizing the allocation of cpu resources (options 'auto evod_parallel' and 'p3dr cpu_sparse' in the ocnfiguration file);
- a tool (a3dm_snapshot) is provided to gather information about a run, to send to developers for troubleshooting.
A complete list can be found in the website and in the modification history file (MINOR_RELEASE_NOTES) provided with the software.
We hope that you will find these changes useful.
Sincerely,
Giovanni
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