Error running VASP in offline mode
shreyas...@gmail.com
Traceback (most recent call last):
File "/home5/shonrao/miniconda3/lib/python3.7/site-packages/fireworks/core/rocket.py", line 246, in run
Rocket.update_checkpoint(lp, launch_dir, launch_id, checkpoint)
File "/home5/shonrao/miniconda3/lib/python3.7/site-packages/fireworks/core/rocket.py", line 443, in update_checkpoint
f_out.write(json.dumps(d, ensure_ascii=False))
File "/home5/shonrao/miniconda3/lib/python3.7/json/__init__.py", line 238, in dumps
**kw).encode(obj)
File "/home5/shonrao/miniconda3/lib/python3.7/json/encoder.py", line 199, in encode
chunks = self.iterencode(o, _one_shot=True)
File "/home5/shonrao/miniconda3/lib/python3.7/json/encoder.py", line 257, in iterencode
return _iterencode(o, 0)
File "/home5/shonrao/miniconda3/lib/python3.7/json/encoder.py", line 179, in default
raise TypeError(f'Object of type {o.__class__.__name__} '
TypeError: Object of type VaspJob is not JSON serializable
Traceback (most recent call last):
File "/home5/shonrao/miniconda3/bin/rlaunch", line 10, in <module>
sys.exit(rlaunch())
File "/home5/shonrao/miniconda3/lib/python3.7/site-packages/fireworks/scripts/rlaunch_run.py", line 155, in rlaunch
launch_rocket(launchpad, fworker, args.fw_id, args.loglvl, pdb_on_exception=args.pdb)
File "/home5/shonrao/miniconda3/lib/python3.7/site-packages/fireworks/core/rocket_launcher.py", line 58, in launch_rocket
rocket_ran = rocket.run(pdb_on_exception=pdb_on_exception)
File "/home5/shonrao/miniconda3/lib/python3.7/site-packages/fireworks/core/rocket.py", line 415, in run
d = json.loads(f_in.read())
File "/home5/shonrao/miniconda3/lib/python3.7/json/__init__.py", line 348, in loads
return _default_decoder.decode(s)
File "/home5/shonrao/miniconda3/lib/python3.7/json/decoder.py", line 337, in decode
obj, end = self.raw_decode(s, idx=_w(s, 0).end())
File "/home5/shonrao/miniconda3/lib/python3.7/json/decoder.py", line 355, in raw_decode
raise JSONDecodeError("Expecting value", s, err.value) from None
json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
The VASP job seems to have run properly, but the FW_offline.json file is empty at the end of the run. Using lpad recover_offline gives the below error and the job fizzles out.
Traceback (most recent call last):
File "/home5/shonrao/miniconda3/lib/python3.7/site-packages/fireworks/core/launchpad.py", line 1691, in recover_offline
offline_data = loadfn(offline_loc)
File "/home5/shonrao/miniconda3/lib/python3.7/site-packages/monty/serialization.py", line 83, in loadfn
return json.load(fp, *args, **kwargs)
File "/home5/shonrao/miniconda3/lib/python3.7/json/__init__.py", line 296, in load
parse_constant=parse_constant, object_pairs_hook=object_pairs_hook, **kw)
File "/home5/shonrao/miniconda3/lib/python3.7/json/__init__.py", line 361, in loads
return cls(**kw).decode(s)
File "/home5/shonrao/miniconda3/lib/python3.7/site-packages/monty/json.py", line 255, in decode
d = json.JSONDecoder.decode(self, s)
File "/home5/shonrao/miniconda3/lib/python3.7/json/decoder.py", line 337, in decode
obj, end = self.raw_decode(s, idx=_w(s, 0).end())
File "/home5/shonrao/miniconda3/lib/python3.7/json/decoder.py", line 355, in raw_decode
raise JSONDecodeError("Expecting value", s, err.value) from None
json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
2019-07-22 16:01:13,056 INFO FINISHED recovering offline runs. 0 job(s) recovered: []
2019-07-22 16:01:13,056 INFO FAILED to recover offline fw_ids: [2, 1]
I was reading through some of the previous threads, but mine doesn't seem to be a gzip-related error. I also tried changing the "db_file" parameter in my_fworker.yaml to null, and I still get the same errors. Any idea why this might be happening?
Thanks,
Shreyas
