looking for rabbit promoter

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Benoit Pourcet

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Sep 20, 2024, 3:06:30 AM9/20/24

to ask...@googlegroups.com

Dear colleague,

Do you know how I could access to rabbit promoters via EPD or others?

Thanks a lot for your help and outstanding tool.

Best

Benoit

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Benoit Pourcet
Maitre de Conférence des Universités - Associate Professor - PhD, HDR
Département de Biochimie, Faculté de Pharmacie, UFR 3S

UMR1011 INSERM, Equipe 5 - Nuclear Receptor, Metabolic and Cardiovascular Diseases

benoit....@univ-lille.fr / www.univ-lille.fr
3, rue du Professeur Laguesse BP 83 59006 LILLE cedex

T. +33 (0)3 62 28 36 64 / poste 76584

benoit....@pasteur-lille.fr / www.pasteur-lille.fr

Institut Pasteur de Lille - bât. E Roux - 01 rue du Professeur Calmette, BP 245, 59019 Lille cedex

T. +33 (0)3 20 87 71 25

CCG EPFL

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Oct 6, 2024, 3:21:48 AM10/6/24

to Ask EPD

Dear Benoit,

Unfortunately, the rabbit is not part of the model organism collection currently supported by EPD. This is because no high-throughput TSS mapping data such as CAGE are available for this genome.

Alternative information sources for rabbit promoters are RefSeq and Ensembl. You can access these resources via the UCSC genome browser at:

https://genome-euro.ucsc.edu/cgi-bin/hgTracks?db=oryCun2

Note, however, that the gene starts indicated in these resources do not always correspond to the transcription start site of the gene.