ASHS Cortical Thickness scripts

[Marianna Pope]

Hi all, 

I am trying to find the cortical thickness of the entorhinal cortex (EC) in my subjects and am using ASHS to create a mask of the EC. 

Researching ways to extract cortical thickness from a specific ROI, I found the paper by Yushkevich (2014) where you used your own script- based on ANTs functions I understood- to extract cortical thickness in the ASHS regions. 

I found a version of the script on Github, but am not sure if it is still up-to-date and functional. 

I was hoping someone of the team could let me know how ASHS exactly extracts measures like cortical thickness, and perhaps offer me a script I could examine? This would be very helpful. 

Thanks, 

Marianna

[Paul Yushkevich]

Hi Marianna,

I am copying Dr. Long Xie, who I believe has Docker containers that can be used for thickness measurements.

Paul

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Paul A. Yushkevich, Ph.D.
Professor of Radiology
Penn Image Computing and Science Laboratory
University of Pennsylvania Perelman School of Medicine