Errors using Penn Memory Center 3T ASHS Atlas for T1 weighted MRI

James K. Park

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Dec 17, 2020, 12:58:29 PM12/17/20

to ashs-users

Dear ASHS Team,

Thank you for allowing a line of communication for us to receive support.

We have recently been using ASHS for segmentation and ran into an error when trying to run ASHS using the Penn Memory Center 3T ASHS Atlas for T1-weighted MRI.

- We are running the v2.0.0(July 2018) ashs-fastashs_2.0.0_07202018.zip version of ASHS

We have had no issues running ASHS with the Penn Memory Center 3T ASHS Atlas (most recent, 20170810.tar version) but for some reason are running into errors when using this Penn Memory Center 3T ASHS Atlas for T1 weighted MRI. We are running ASHS in this case using only T1 imaging data.

The error we noticed was:

dyld: Library not loaded: libvtkDomainsChemistryOpenGL2-7.1.1.dylib

Referenced from: /Applications/ashs-fastashs_beta/ext/Darwin/bin/NLMDenoise

Reason: image not found

/Applications/ashs-fastashs_beta/bin/ashs_template_qsub.sh: line 155: 62600 Abort trap: 6 NLMDenoise -i $SUBJ_RAWTSE -o $SUBJ_TSE_DENOISE

[0;31m

**************** !! ERROR !! *******************

Validity check at end of stage 1 detected

missing files. (mprage_to_chunktemp_left.nii.gz

and 14 other files).

************************************************

Please let me know if you require any additional information.

Thank you for your help in advance.

Sincerely,

James Park

Emory Dept. of Neurosurgery

Paul Yushkevich

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Dec 17, 2020, 4:07:34 PM12/17/20

to James K. Park, Xie, Long, ashs-users

This looks like a question for @Long! Sounds like a library was built with dynamic dependencies?

Paul

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Paul A. Yushkevich, Ph.D.
Professor of Radiology
Penn Image Computing and Science Laboratory
University of Pennsylvania Perelman School of Medicine

James K. Park

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Dec 18, 2020, 9:30:01 AM12/18/20

to Paul Yushkevich, Xie, Long, ashs-users

Dear Paul and Long,

Thank you so much for your quick response!

Any help would be greatly appreciated.

Hopefully it is not an error that is too tricky to figure out.

Please let me know if I can provide any further information to help solve this problem.

Thank you again.

Sincerely,

James Park

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