Questions about SAMMate and EdgeR
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Chi-Fu Chou
May 17, 2013, 6:51:34 AM5/17/13
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Thank you in advance for this convenient SAMMate. I am a novice to RNA-seq analysis.
I tried to detect differential expression using EdgeR called by SAMMate with only 1 test and 1 control. The result seems differ from the known bench data.
Indeed I am also not familiar with R as well as EdgeR. Was normalization applied during detection? What are the command lines used for the detection?
Best regards,
Chi-Fu Chou
I tried to detect differential expression using EdgeR called by SAMMate with only 1 test and 1 control. The result seems differ from the known bench data.
Indeed I am also not familiar with R as well as EdgeR. Was normalization applied during detection? What are the command lines used for the detection?
Best regards,
Chi-Fu Chou
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