bam files cannot be parsed

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Nov 4, 2015, 4:31:26 AM11/4/15

to asammate

I have several bam files whose alignments were generated by hisat. Sammate says it cannot parse them.

Thanks,

Tirza Doniger

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Nov 4, 2015, 4:32:37 AM11/4/15

to asammate

also- I tried it both on unix and one windows. It yields the same error.

SAMMate-2.7.4

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