I have a problem with the process function where it says csC
csC <- process (acc, verbose = verbose)
Failed with error: ‘there is no package called ‘sfit’’
I have copy number data of a geo dateset and i want to process it with this package. I saw the Vignette page of the package and I followed all the setup steps step by step.
R gives me the error in which it says it does not find the sfit package, if I try to install it from outside with different functions, they all tell me that the package is not found or not available for my version of r WHICH is 4.0.3 , the last.
Error in file (filename, "r", encoding = encoding):
I can't open this connection
Also: Warning message:
In file (filename, "r", encoding = encoding):
cannot open URL 'http://callr.org/install#HenrikBengtsson/sfit':
HTTP status was '400 Bad Request'
Downloading GitHub repo HenrikBengtsson/sfit@HEAD
√ checking for file 'C:\Users\mirko\AppData\Local\Temp\Rtmp0U19NX\remotes46d42edc29b\HenrikBengtsson-sfit-dd85e19/DESCRIPTION' (736ms)
- preparing 'sfit':
√ checking DESCRIPTION meta-information ...
- cleaning src
- checking for LF line-endings in source and make files and shell scripts (637ms)
- checking for empty or unneeded directories
- building 'sfit_0.3.1.tar.gz'
Installing package into ‘C:/Users/mirko/Documents/R/win-library/4.0’
(as ‘lib’ is unspecified)
* installing *source* package 'sfit' ...
** using staged installation
running 'src/Makefile.win' ...
cc -c -o cfit.o cfit.c
make: cc: Command not found
make: *** [<builtin>: cfit.o] Error 127
ERROR: compilation failed for package 'sfit'
* removing 'C:/Users/mirko/Documents/R/win-library/4.0/sfit'
Errore: Failed to install 'sfit' from GitHub:
(contertito da avviso) installation of package ‘C:/Users/mirko/AppData/Local/Temp/Rtmp0U19NX/file46d4153539da/sfit_0.3.1.tar.gz’ had non-zero exit status
R version 4.0.3 (2020-10-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19041)
Matrix products: default
 LC_COLLATE=Italian_Italy.1252 LC_CTYPE=Italian_Italy.1252 LC_MONETARY=Italian_Italy.1252 LC_NUMERIC=C LC_TIME=Italian_Italy.1252
attached base packages:
 parallel stats4 stats graphics grDevices utils datasets methods base
other attached packages:
 SummarizedExperiment_1.18.2 DelayedArray_0.14.1 matrixStats_0.57.0 Biobase_2.48.0 GenomicRanges_1.40.0
 GenomeInfoDb_1.24.2 IRanges_2.22.2 S4Vectors_0.26.1 BiocGenerics_0.34.0
loaded via a namespace (and not attached):
 compiler_4.0.3 BiocManager_1.30.10 XVector_0.28.0 prettyunits_1.1.1 R.methodsS3_1.8.1 bitops_1.0-6
 R.utils_2.10.1 remotes_2.2.0 tools_4.0.3 zlibbioc_1.34.0 pkgbuild_1.1.0 preprocessCore_1.50.0
 lattice_0.20-41 Matrix_1.2-18 cli_2.1.0 rstudioapi_0.11 curl_4.3 GenomeInfoDbData_1.2.3
 withr_2.3.0 rprojroot_1.3-2 grid_4.0.3 glue_1.4.2 R6_2.4.1 processx_3.4.4
 fansi_0.4.1 callr_3.5.1 backports_1.1.10 ps_1.4.0 assertthat_0.2.1 affy_1.66.0
 RCurl_1.98-1.2 crayon_1.3.4 affyio_1.58.0 R.oo_1.24.0
Please, can someone help me ?