Hi stephen:
I also met such confused problem.
However, I do some try on the calculation of my basins.
I fully output all the items in the HRU and extracted the value from "SW_END" column for each HRU.
Then I calculated the Wilting Point (WP) mannually based on the equation:
WP=0.4*ClayPercent*BulkDensity/100
One thing shocked me is that, my SW_END value in somedays are lower than the WP value.
So I guess, high probebly that the SW_IN and SW_END here is the true Water Contnent minus the WP value.
I will do further confirmation.
I am also looking forward to the new message from you