Hi Raul,
I had similar problems in the past months.
When you install ArcSWAT, you get examples and a manual. The manual is helpful. You should be able to find it in the folder where you installed ArcSWAT (C:\SWAT\ArcSWAT\ArcSWATHelp\ArcSWAT_Documentation_2012.pdf). In the manual you might want to look at page 13, where User-Defined Watersheds are explained. You will notice over there it is mentioned about examples. The examples are found in this directory: C:\SWAT\ArcSWAT\Databases\ExInputs. There are two shape files, one for UserStreams and UserWatersheds.
Try to mimic those formats, for the columns of the dbf files. I have a couple of problems with them but noting too big.
A couple of good resources are these two conversations, about this topic.
Hope this helps
Best,
Hector